Scyliorhinus canicula (smaller spotted catshark): 119954043
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Entry
119954043 CDS
T11175
Name
(RefSeq) LOW QUALITY PROTEIN: rho guanine nucleotide exchange factor 12-like
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04270
Vascular smooth muscle contraction
scau04625
C-type lectin receptor signaling pathway
scau04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
119954043
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
119954043
09153 Circulatory system
04270 Vascular smooth muscle contraction
119954043
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
scau04131
]
119954043
Membrane trafficking [BR:
scau04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
119954043
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_16
RhoGEF
PDZ
PDZ_6
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
PH
STI1-HOP_DP
Motif
Other DBs
NCBI-GeneID:
119954043
NCBI-ProteinID:
XP_038634743
LinkDB
All DBs
Position
19:106174239..106269795
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AA seq
781 aa
AA seq
DB search
MSVTPSGLSERFPIRRLPRQGGSILNKDLSPDKKHDKKNSEKSLYEFDPTGLVQRCVIIQ
RDENGFGLTVSGDNPVFVQSVKEDGAAVRAGVQQGDRIIKVNGSLVTHSNHVEVVRLIKC
NCVTLSLAHVEFSCSEEDKFKRAAATFCSNQPFALELIKSKQKKDSRFQAIIQEAQSNPQ
CRRLQLKDIIPTEMQRLTKYPLLRENIAKNTDPEQHEEKKKVKKAAECCRQILNFVNQAV
KEAENKQRLEDYQRRLDLSNLKQSDYPLIEEFRNLDLTKRNMIHEGPLTWRVNKDKTIDL
YTLLLEDILVLTQKQDERLMLKCHSKNLAANADTKHIFSPIIKLSAVLVREVATDNKAFF
VISTSTDGAQIYELVAQTVSERKTWQYLISQTSGSMKAPSHHVISEPAVTESEHEDEENL
STIQQSGSSKVSDRMLGSDESTQGKETLPVTDDTLNLSTSNKRKPHALALMQETDEQARH
TPENTGLHRPSAGRVPCANTEPHSSSQGRSSVSSFSCSRAEAALTNLHALKQLLFFHMLN
SDDGSDGGSILPVPEEDSVLTLLKQGAEEPPDCATCCQCETPDKGLQHQVELANGTLEES
EAQASVSERTKPPCHFTPGAAHVERNTTEEHGPDSTTEDGGERFYDAPEDHADEQRSQRN
SSTSNKDERSKSQVCVSGNFLTQDRFPQVEGSSTGETDMSESPVHCTTQNIESRENRSAL
EPCNPERDARQLLPSLDIQNQILQLMHNLESDLKHLKGVELEYYNQQILESAALHEQTGD
S
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
atgagcgttacaccgtccggcctgagtgagaggtttcccatcagaagacttcccaggcaa
ggaggaagcatactgaacaaggacctgtcacctgataagaagcatgacaagaagaactct
gagaaatctctgtacgagtttgatccaacaggcctggttcaacgctgtgtcataattcag
agagatgagaatggatttggcctgacggtcagtggcgataatcctgtgtttgtccagtct
gtcaaagaggatggggcagccgtgcgcgcaggtgtgcagcagggcgacagaatcattaag
gttaatggatcactggtgactcactcgaatcatgtggaggtggtccgattaattaaatgt
aattgtgtgacgctgagccttgcacacgtggagttcagctgctctgaagaggataaattt
aaacgtgcagctgccactttctgcagtaatcagccctttgccctggaactcatcaaatca
aaacagaagaaggattccagattccaggccatcattcaggaggcacaaagtaatccgcaa
tgccggaggctgcaattaaaggacatcatcccaacggagatgcagcgactgaccaaatac
ccactgcttcgggaaaatatcgccaaaaacactgatccagaacaacatgaagagaagaag
aaggtgaagaaagcagcagaatgttgccgtcagattctgaactttgtgaaccaggctgtg
aaggaagctgagaataagcagcggctggaagattaccagcgtcgcttggacctgtccaac
ctgaagcagtccgattacccactgattgaggaatttcggaatctggatcttacaaagcgg
aatatgattcacgaagggcctctgacttggcgggtgaacaaagacaagacaattgatctt
tacacactgctgttagaggacattctggttctgacgcagaagcaagatgaacgactgatg
ttgaagtgtcacagtaagaatctcgctgccaacgcagacaccaaacacatcttcagcccc
atcatcaaactgtctgctgtgctcgtgcgggaggtcgcaacagataataaggcttttttt
gtcatctcaacatcaactgatggtgcacagatctatgagctggtggcccagactgtctct
gaacgcaaaacgtggcaatatttaatctcacagacttcaggatcaatgaaagcaccaagt
caccatgtgatttctgagccagctgtgacagagagtgagcacgaggatgaggagaatctg
agcacaatccagcaaagtggatctagtaaagtttcagacagaatgttgggcagcgatgaa
tcaacacaaggtaaagagacgctgcctgtgactgatgacactctgaatctctcaacgtcc
aataaacggaaacctcatgcactcgccttgatgcaggagactgatgagcaagctagacac
acaccggagaacaccggcctccacagaccatctgcagggcgagtgccgtgcgcaaacact
gagccgcactcttcaagccagggtcgatcttcagtctcatcattctcctgttcacgagca
gaggctgcactaacaaaccttcacgccttgaaacaattgctgttctttcacatgctgaat
tcagatgatggtagtgatggaggctcaattctgcccgtgccagaggaggatagtgtactg
acattgctaaaacaaggggcggaggagcctccagactgtgcaacatgttgtcagtgtgag
acacctgacaaaggtctgcagcatcaggtagagttagccaatgggactctagaggaatcc
gaagctcaggcaagtgttagtgaaaggactaaacctccctgtcactttacgccgggggca
gctcacgttgagcgtaacacaactgaagagcatggcccagactctactacagaagatggt
ggagaaaggttctatgatgccccggaagatcatgcagatgaacaacggtcacagaggaac
agctcaacttccaataaagatgagaggtcaaagtcacaagtatgtgtgtcaggaaatttc
ctaacccaggacagatttccgcaggtcgaggggagttccactggtgaaacagacatgtct
gaaagtcctgtgcattgtaccacccaaaacatcgaaagcagggagaaccgcagtgcactg
gagccatgtaacccagagagggacgctagacagctgctcccttcattggacatccaaaat
caaatcctccaattgatgcacaaccttgagtcggatctgaaacatttaaagggggtggag
ttggaatattacaatcagcaaatcctggaatcagcagcattgcatgaacaaacgggagac
agttaa
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