Scyliorhinus canicula (smaller spotted catshark): 119954309
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Entry
119954309 CDS
T11175
Name
(RefSeq) integrin alpha-8-like
KO
K06584
integrin alpha 8
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04510
Focal adhesion
scau04512
ECM-receptor interaction
scau04514
Cell adhesion molecule (CAM) interaction
scau04810
Regulation of actin cytoskeleton
scau04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119954309
04514 Cell adhesion molecule (CAM) interaction
119954309
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119954309
09142 Cell motility
04820 Cytoskeleton in muscle cells
119954309
04810 Regulation of actin cytoskeleton
119954309
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
scau04515
]
119954309
Cell adhesion molecules [BR:
scau04515
]
Integrins
Integrin alpha subunits
119954309
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Integrin_A_Ig_3
Integrin_A_Ig_2
Integrin_A_Ig_1
FG-GAP
FG-GAP_3
Integrin_alpha
ITGAX-like_Ig_3
MCP-like_PDC_1
Motif
Other DBs
NCBI-GeneID:
119954309
NCBI-ProteinID:
XP_038635355
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Position
19:38502056..38696084
Genome browser
AA seq
1046 aa
AA seq
DB search
MLPCPRTVWEPYLWHLRVILPFFSCLLLQLHAFNLDAENPTVYSGPEGSYFGFSVEFYLP
DNGISAVLIGAPKANTTQENVTEGGAVFLCPWSSNQSLCSLIPFDTEGDQHIRSESEEMK
DYKSNQWFGATIKSRKEQVVACAPMYHWQYSMKNRTSGPTPTGTCRIAAQNFNTFAEYSP
CRSKTTEDQVQRGAPDQRFCEAGWSSAITEAGEVLLGAPGSYFWQGQFFTANIEQIINNY
DGNEPLKILGSKKQTDEANVRNDNNFKGYSLAMGEFTGDSEKEYLLGVPRAENTLGSVHI
LQKADLKTTQTIVGEQVAAYFGYVVAVTDINSDGKDDILVGAPLFISSGPDGKRHEFGQV
YVYLQEKGVPFKEPTQTFTGTDKFGRFGSAIATLGDLDYDGYKDVAIGAPHAGEDGNGRV
FIYFGHAHGLHPKFYQELKGKWAPVVVSAGFGFSLRGGEDIDANNYTDLIVGAHDADKVL
LYRARPVITAEADVILTPDTLNPNQTTCRSPQILDLVTCFEVQVCVKMKGYGIGQQFALN
AQVELDKNKQQTQRRTLFLHSHQSQENFQLLPMGNKETTCRNFTAYLRHEKEFKDKLSPI
VVTLNCSISEEQRLSSGSLTPVLSPHSQVKVTKQTSILLECGSDGVCIPDLHLTATADKK
LLLAGELNPLTVSISAANHADNAYETELHIPIPQQIDFISVVRDNKNLTKLSCNPRMEND
TQVVICDLGNPMKRGAKLSAGLHFTVHSLEQVESVTFSMQIKSKNSQNSHSKVVLLKLLV
QVMAQLVLRRASLPEKIVLPYIDRESPADVMVKNESLPTVQHTYELHNNGPSTISEAVLE
VDWPADLHGNSLLFKSKIIPLGRINCTVNSSDAQNWVEPLSTMSPLSKSTESSRHNRNKR
DISKPENSLEETIFNMNCTTVTCVKIICRVGLLEKEKGVAVNIQSQLRMEIFVKNHNQQF
MFQSKGSFVVQEMPYKAKPVEYPRDTKMVQTLIERSEPEQAMPVPTWCIVVAVLGGLLLV
AVVTFLFWKCGFFKRNLPPMEAEGLL
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atgctgccctgtcccagaacagtttgggaaccatacctgtggcatttgagggtgattctg
ccgtttttttcctgcttgctattgcaattacatgcattcaatttggatgcagagaatcca
accgtttactcggggcctgaagggagttattttggattttccgttgagttctacttgccc
gataatgggatttcagctgtccttattggtgcccccaaggcaaatacaacacaagaaaat
gtaacagaaggtggagcagtgtttctctgtccatggtcgagtaaccaaagcctgtgcagt
ttaataccattcgatactgagggtgaccaacatatccgcagtgaatcagaagagatgaag
gattataaatccaatcaatggtttggggcaacaatcaaatcacgcaaggagcaagttgtg
gcctgtgcaccgatgtatcactggcaatattcaatgaagaatagaactagtggaccaact
cctacgggcacatgtagaatagcggctcaaaacttcaacacctttgcagaatattcaccc
tgtcgctccaagactacggaagatcaggtgcagcgaggagctcccgaccagcgtttttgt
gaagcaggatggagcagtgcaatcacagaggctggagaagtactactgggagcacctggc
agctacttttggcaaggtcagttttttactgccaacattgaacagattatcaacaattat
gacggtaatgagcctctgaagatactgggatcaaagaaacaaacagatgaagcaaatgtg
agaaatgataacaactttaagggatattcactcgctatgggagaattcaccggagactct
gaaaaagaatatcttttgggggttcccagggcggaaaacactttgggttcagtacacatt
ctacagaaggcggatttaaaaacaacgcaaactattgtaggtgagcaggtagcagcatac
tttggctatgtggtggctgtcacggacataaacagtgatgggaaagatgatattttagtc
ggggcacctctctttatcagctccggaccggatggaaagcgccatgagtttgggcaggtt
tatgtttacctacaagagaagggtgtacccttcaaagagccaacacagacttttacagga
acagacaagtttggtcgatttggcagtgccatagccacccttggggaccttgattatgat
ggatacaaggatgtcgcaatcggagcaccacatgccggtgaagatggcaatggaagagtg
ttcatttactttggccatgctcatggactccatccaaaattctatcaagagctgaaggga
aaatgggcacctgttgtagtgtctgcgggatttggcttctcactgaggggaggggaggat
atagatgcaaacaattacacagatttgattgttggtgcccacgatgctgataaagttctg
ttatacagagcaagaccggtcataacagcagaagctgatgtcatacttacacctgacaca
ctgaatccaaatcaaacaacatgtagatcgccacagattcttgacctggtgacatgtttc
gaagtgcaggtctgcgtaaaaatgaaaggatatggtattgggcagcaatttgcactgaat
gctcaagttgagttggataaaaacaaacagcagacccagagacgaaccctctttctacat
tcgcatcaatcccaggaaaattttcagcttctcccaatgggaaacaaggagactacttgc
cgtaatttcaccgcctacctcaggcatgaaaaagagtttaaagacaagctgagtccaatt
gttgtgactctgaactgcagtatatctgaggagcagaggctgagttctggcagcctgacg
ccagtgttgagtcctcacagtcaagtcaaggtgacaaagcagactagtatcctactggag
tgtggaagtgatggagtatgtatcccagatctccacctgactgcaacagcagataagaag
cttctgctggctggtgaattaaatccgctcactgtgagtatcagtgcagccaatcatgca
gacaacgcctatgagacagaactccatatccccatccctcagcaaatagacttcataagt
gttgtgcgcgacaataagaacctcactaagctcagctgtaaccccagaatggagaatgac
actcaagtagtgatctgtgaccttggtaaccccatgaaacgtggcgcaaagttatctgca
gggctccatttcacggtgcacagcttggagcaggtggagagtgtcacattcagcatgcag
attaaaagtaagaactcacagaactctcacagtaaggtggtccttttgaagttgctcgtt
caggttatggcgcagcttgttctcagacgggcttcgctacctgagaaaattgtcctccca
tatattgatcgagagtcaccagcagatgtaatggtgaagaatgaatctctgcccacagtg
cagcacacatatgagctgcacaacaatggtccatcaacaattagtgaggccgtgcttgaa
gtggactggcctgcagatctccatggcaacagtctactgttcaaatctaagattatccca
ttggggagaatcaactgcacagtgaactcttctgatgctcagaactgggtagaaccgttg
agtacaatgagccctctgtctaaaagcactgagagctcccgtcataatagaaacaaaaga
gacatcagcaaacctgaaaattcactggaggagaccatctttaatatgaattgcaccact
gtgacctgtgtgaaaattatctgtcgtgtgggtcttctggagaaggagaagggagtcgcg
gttaacatacagtctcagctcaggatggaaatcttcgtgaagaaccataatcagcagttt
atgttccagtccaaaggatcgtttgtcgtgcaggaaatgccatacaaagcaaaacctgtg
gaataccccagggacaccaagatggtacaaactcttattgaacgcagtgagcctgaacag
gccatgcccgtgcccacctggtgcattgtagtcgctgtgctcggtggcctgctactagtg
gctgtggtgacatttctattttggaagtgtggatttttcaagaggaatctgccgcctatg
gaagccgaaggattgttgtaa
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