Scyliorhinus canicula (smaller spotted catshark): 119954675
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Entry
119954675 CDS
T11175
Symbol
cpsf6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03015
mRNA surveillance pathway
scau03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119954675 (cpsf6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
119954675 (cpsf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scau03019
]
119954675 (cpsf6)
Messenger RNA biogenesis [BR:
scau03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
119954675 (cpsf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
119954675
NCBI-ProteinID:
XP_038636021
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Position
20:complement(25971390..26017343)
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AA seq
604 aa
AA seq
DB search
MADGVDHIDIYADVGEEFNQESEYSGHDQIDLYDDVISPSANNGDAPEDRDYMDSMPQSV
SDDGGKSSNSLGPNIVYTYTGKRIALYIGNLTWWTTDEDLTEALHSMGITDVLEIKFFEN
RANGQSKGFALICVGSESSSKKLLDMLPKRDMHGQNPIVTPCNKQSLSQFEMQSRKSTQS
GQMSGEGKAGPPGANSRLAFSQSGRGRGRFPPSGPGGDRFPGPSGPGGPPPFPEKNYADG
NQRNVATLRVGNGQQNVSWAALRPQMGRMWPLGRRLPTTGLTGQGPPRPPPGPPGPPGPP
GPPPPGQGLPPPLGGPPNRGDRPPPPVLFPGQPFGQPPMGPLPPGPPPPVPGYGPPPGPP
PPQQGPPPPPGPFPPRPPGPLGPPINLAPPPHLPGPPPGAPPPAPHVNPAFFPPPANNVI
PSSDSRGPPPSDPYGRPPPYDRGDYGPPGRDMDSSRTPLSEAEFEEIMNRNRAISSSAIS
RAVSDASAGDYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGSGSR
KRERSRERDHSRSREKSRRHKERSRSRDRHDDYYRERSRERERHRDRERDRDRERDRERE
YRHR
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atggccgatggcgtggatcacatcgacatttatgctgatgtcggcgaggagtttaaccag
gagtctgaatatagtggccacgatcagatagatttgtatgatgatgtcatatcaccatcg
gccaataatggagatgcaccagaggatcgtgattatatggacagcatgccacagtccgtt
tcagatgatggtggcaaaagttccaattcgttgggtccaaatattgtttatacctatact
ggcaagcgaatagctttgtacattgggaatctgacatggtggaccacagatgaggatttg
actgaagctcttcattcaatgggcattactgatgttttagaaataaagttttttgagaac
cgggctaatggacagtcaaaagggtttgccctcatttgtgtgggatctgaaagttcgtcc
aaaaaactgttggatatgcttccgaaacgagacatgcatggacagaatcctatcgtcaca
ccatgcaataagcagtcactcagtcaatttgaaatgcagtctaggaaatctactcagtct
ggccaaatgtcaggggaaggcaaagctgggcctcctggagccaacagtcgcttagcattt
tcccaaagtggaagaggacgtggtcgttttccaccatctggccctggtggggacagattt
ccaggaccttctggaccaggagggcccccaccttttcctgaaaaaaactacgcggacgga
aatcagcggaatgtggcaactctgcgcgtgggcaacggtcaacaaaacgtctcgtgggcc
gcactcagaccccagatgggccgcatgtggcccctgggccgcaggttgcccaccactggc
ttaactggacaaggtccaccacgaccacctccaggtcctcctggcccaccaggccccccg
ggtccgcctccacctgggcaaggtcttcctcctcctctaggtgggccaccaaatcgtggt
gatcgtcctccacctccagttttgtttccagggcaaccgtttgggcaacctcccatggga
ccgcttcctcctggtcccccccctcctgttccaggttatggccctcctcctgggccccct
cctcctcaacaaggaccaccaccaccacctggtcctttcccaccacgtcctccaggtccg
cttggccctcctattaatcttgctccacctccccatcttcctggaccacctcctggtgca
ccacctccagccccccatgtaaatcctgctttcttcccaccaccggccaataacgtaatt
ccctcatctgacagtcgtggaccacctccgtcagatccatatgggcggcctccaccatat
gatcgaggagactacggacctcctggcagagacatggattcttcacggactccactgagt
gaagcagaatttgaggaaatcatgaatcgaaacagagccatttctagcagtgcaatatcg
agggctgtgtcggatgctagtgctggtgattatgggagtgccattgagaccctggttact
gctatttctttgattaagcagtctaaagtatctgctgatgaccgttgtaaagttctcata
agttctctacaggattgtcttcatggaatagaatcaaaatcatatggttctgggtcacga
aaacgtgaacgttcacgggagagagatcacagtagatcgagagagaaaagcaggcgccac
aaagaacgctcacgaagccgtgatcggcatgatgactattaccgtgaacgaagtagagag
cgggaaaggcatcgtgatcgtgaacgagatagagacagagagcgagacagagaacgagag
tatcgtcatcgttaa
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