Scyliorhinus canicula (smaller spotted catshark): 119954689
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Entry
119954689 CDS
T11175
Symbol
utp20
Name
(RefSeq) small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
scau03009
]
119954689 (utp20)
Ribosome biogenesis [BR:
scau03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
119954689 (utp20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
Merozoite_SPAM
Motif
Other DBs
NCBI-GeneID:
119954689
NCBI-ProteinID:
XP_038636090
LinkDB
All DBs
Position
20:complement(42174675..42315754)
Genome browser
AA seq
2778 aa
AA seq
DB search
MKNKSARHRTDNTFRFLTFSERLANVNIDIIHRIDRTGSYAEEVETYFYEGLEKWRDLNC
TEYFVKFHKEVYGRTQSFNQLVYHQNAVVESLKNHLQIKNSLAYQPLLDLVVQLARDLQR
DFYPHFRDFFVIITSLLNTQDTELLEWSFTCLSYLYKHLWRLMVKDITDIYSLYSSLLGH
NKEHIRCFAAESFAFLMRKAPDHNALFNFMFADLEQHSEKAEGVGQLFFDVCRGVQNTFH
SCAAKVFPVVLQKLGPVTEPDVVLPWDIVGKAVGHMAKSCAAYVDKEHFDVIWSCLRGCI
LGLRSKLNCDDRQQGSEQIQRLLQIYQVLLESGQGSKVTQPEEVCETLIQMLQDSQMAAP
CCKTLLEVLSTLLKAENVTLPKALIKEASRKVFSSGFERALILEFSEEMFTMHQFEQLFL
PNLLQYVEECFAIAEPSVREETLGLLVKLILAKAEPPTIGSMAFEKYPLLFTGQVSHLSD
ENDSNGVKAGGPVTLVLDFILSLLHLPEDEDGLAHSWAALVVLPHIRPMKTEDVLVSVQS
FLNCLLAVLEEGDSINEGWTYVARQAVSTLLSLTETLEILNFLPVERVRNLMKNSPSDPS
ALLLGDLYYTRVALCGCNDLISQDSLPDLFKELRPNLSTDISKVRLLTLRIMSHFEVQLR
KKVEDENDGDLQSVFAILLQAELVPATVHDYREKLLHLRKLRHDLVQMCVPDSLYDEVPL
QYLIGMLYINFSALWDPVVELIVSHANGMENKAFWHVYYEHLDQAAHFAEQELKSEFGEA
LKEEATPSTESIPTAIVGRLYQDQLHLATKSCERTDRTNFRFLLWKAMGDFSDRVEPRSR
ELSPLLLRFINNEYYPVDLLVAPAEDIRKQQHADEKATTVELKDESSAIDSEVAAPEDPT
FAVGKKPRRAAVKQLIVHLKVFSKFNNPRSLYLEPKLKELYTQLLCHHYQDVQKIALECL
LTYKHPHLLPYRENLQRLLEDKSFKEEIIHFSIAEETTIVSAPHRAELIPVIMRILYGRM
RSKTGNKTQGRAAAGTRMAIVLNFLAGSLPQEIDAFLDLLLEPVKHLTEGSCLCTVLQSV
KSLDMSKVLPLGRQHGLLNGIELVMKKLGHLIQDYLLKLLQIVLCMTASVSQILQLRDQV
QPRCLNQLKYLRRLGINQTAAFFSDFESYAFTVDEVDAVFHSVVWPQINRLATEGQYAPT
PLLKLIHIWSKNSRYFLLLAKQLPDHPESDVLTNVFALLSSKNIADPTVTVVMDIVDNLL
STPDFTPTAQASTLTVNDAIFPEPSATAEDSPSMGICLILPHISAILQHLNKAVGNKDRM
KRKKFRTQVSKDLSILSRISRFVQDKEQSTVLINLLMPYLSKPNTSQDTEIDILQTIQNL
LQHCSNPSTFVKPLAALFSVIQNKLSRQTLCSVFQTLADLDGSLAYIAEIVTKLNSFDRQ
HLDDIDFDERLFAFQLATSTIKEMKRLDMVYLMPVMHNCFYSIQLGEMTLSDSATLCLSA
VVQQVASVDCSEEEYKEVVTRTLLETLRNCLKTKIESVQQEYTTLLCCLIRTFPQRLEFQ
DLVQLTDHDPEMDFFENTKHIQIHRRARALKKLAKQLDEEKITLSSKSLVNYILPYATSI
LFNENMLKYENMTTASVELVGASCKHLSWSPYMYYVKRYIHVLQTGQINQKLAVSLLLSV
LQAFHFDPESLQKELEAVQKTIDENAVEGDEEELTEAMELEDAIDEEKEVFAETLNEDNA
VHNEDSAGKNILTKGAKKPVASQPKNKQELENLIEHIQTSVTNNILPKLQKCLIAKVERD
EQHKLVKSKIVNDEELVRIPIAFAMVKLMQTLPKEIMDSNLPSILIKVCMLLRNRAQEIR
DVARNTLTKIIETLGPGYLLYLLKEMQSTLIKGYQVHVLTYTVYMLLKSLVPKLNSADLD
PCMDVLISIFNHELFGEIAEEKEVRGIVSKVMEARRSKSYDSYEILAQFVGKAQVTKLIL
PLKEILENTTILKQARKVQETFNRIVSGLLLNEEMTADSILLLSHGLVTQSLPLMAKRTK
GKRKKAFESRAGLKPQSCLLLPPTPTRQGEKAATSTKTNMHILVDTGLRLLHMSLKRSKV
NSSEDHILEMMDPFVQVLIDCLQSMHVKVITAALQCLTWVLKFPLRSTETLADQLTQQLF
LLLKDYAKAGAGKGENFHLVVNCFKAITILVRNMTGCTITDKQLQILLGYAEEDIYDSSR
QAAAFGLLKAILSRKLLVPEMNDVMQKVAKLAVTGQSELVRVQCRQVYVKFILDYPLGDK
LKPHLEFIVAQLSYEHEIGRESALEMLAYIFQSFPQDLLQQYCALFFVPAALMIVNDDSP
KCKKMAALAARSLLSKVDERHKDLMFSLVLKWFESGKISHRRLAAHACGLFVEAEGVAFE
KRIATVLPILQTEINPERFQNIHEEMEEKAADRLLFSLLTLVVKLVKDCNLIELRKPDTI
LSAIWGHVQTHLRYPHSWVWLTSAQLFGMLFASHQPEELVAKWNTGKSSITAKNSLEAPA
TRFLLEELDVKIEDLALAFCDQLNSKFLDQTLGEQVIKNLLFVAKVMYLLESVDRGDAKK
EEGTAESDEEIGAEETGEEEVAGKGASKKSTLMWLIKKLCILVKREAAHSPKIPLKRTCV
FKFLGAIAVNLGMDGVKPYLPTIIAPLYRELNSTYADQDPTLRNLSQEIIELLKRLVGLE
TFSMGFAAVQKQASQKRALRKRQKALQTVANPDIAARKKLKKHKNRSEARKRKIEVLRPG
YKAKRARSHALKDLAIVE
NT seq
8337 nt
NT seq
+upstream
nt +downstream
nt
atgaagaacaaatcggcccggcaccggaccgacaacacattccggtttctcaccttctct
gaacgattggcgaatgtgaatattgatataattcaccggattgatagaactgggagctat
gctgaggaggttgaaacctatttttatgaagggttggagaaatggagagacctgaattgc
acagaatactttgttaaatttcacaaagaggtgtacggaagaacccagtcttttaatcag
ctggtatatcatcagaatgcagttgtggaaagcttgaaaaaccaccttcaaatcaagaac
agcctggcctatcagcctttacttgacctggtggtacagctggccagagatctgcagagg
gatttctatcctcacttcagagacttctttgtaattataacctccctgctgaacacacaa
gacacagagctgttagagtggtccttcacgtgcctctcttacctgtacaaacacctctgg
agacttatggtgaaggacataacggacatttacagcttgtacagttcacttttgggccac
aataaggaacacatcagatgttttgcagctgaaagttttgctttcttgatgagaaaggct
cctgatcacaatgcccttttcaacttcatgtttgctgacctggagcagcactccgagaag
gctgagggtgtgggacagctgttttttgatgtgtgcagaggagtccaaaataccttccac
tcatgtgctgccaaggttttccctgttgtcttacagaaattggggcctgtcacagagccg
gatgttgtgctaccatgggatatcgttgggaaagcagttggccacatggccaagtcttgt
gcagcctacgtcgacaaggaacactttgatgtaatctggagctgtttacgaggatgtatc
ctgggcctacgcagcaaattgaactgtgacgacaggcagcaaggctctgaacaaatccaa
cgtttactgcagatataccaggtgctgttggaaagtgggcaggggtcaaaggttacccaa
cctgaggaggtctgtgagaccttgatccagatgctgcaggattcacagatggcagcaccg
tgctgtaagactttgctcgaggtactctccaccctcctcaaggctgagaatgttactctg
ccgaaagcattgatcaaagaagcgtctagaaaggttttcagcagtgggtttgagagagca
ttgattctggagttctccgaggagatgtttaccatgcatcagtttgaacagctgtttctg
ccaaacttgctgcagtatgtggaggaatgttttgcgattgctgaaccatctgtcagggaa
gaaactctgggacttctggtgaaactgattctggccaaagctgagcctccgaccattggt
tcgatggcatttgaaaaatatcctctgctcttcacaggacaagtctcccatttgagtgat
gaaaatgattccaatggtgtgaaggctggaggaccggttactttggttttagacttcatc
ctgtcattgctccatctacctgaagatgaagatggtcttgcacatagctgggctgctctt
gtcgttcttcctcatatcaggccaatgaaaacagaagacgtgttggtctccgttcagtca
tttcttaattgtttactggctgtacttgaagaaggtgattccataaacgaaggatggacg
tacgttgcccgtcaagcagtcagtacgcttctgagcctaaccgagactttggaaattctc
aactttctgcctgtagaacgtgtaaggaatttgatgaaaaactcaccgtctgacccctct
gccctattgctgggtgacctgtactatactcgggtagctttatgtggctgcaatgatcta
atttcgcaagactctctgcctgatctgttcaaggaacttcgaccaaatctttcaacagac
atttcaaaggtgcggctgcttacactgaggatcatgagtcattttgaagtgcagctacgt
aaaaaagttgaggatgagaatgatggagatcttcagtctgtatttgccatcttactccaa
gctgagcttgtccctgcaactgttcatgactacagggagaaattattacatctgaggaag
ctaagacatgatctggtacagatgtgcgtccctgacagcctgtatgatgaggttcctctt
cagtatttaataggaatgctttatataaacttcagtgcactgtgggacccagtggtcgag
ctaattgtatcccatgcaaatggaatggaaaataaagcattctggcatgtttattatgaa
catttggaccaggcagcacactttgcagagcaagaattaaaatctgaatttggggaagca
ctgaaggaagaggccacaccgagtactgagagtattccgacggctattgtcggaagattg
taccaggatcaacttcacttggcaactaaatcctgtgagagaacggatcgcaccaacttc
cgtttcctgctttggaaagcaatgggtgacttttcagacagagttgaacctcggtcaagg
gaactctctcctttgctcctgagatttattaacaatgaatattatccagtggatttgttg
gtagccccagctgaggacatcaggaagcagcagcatgctgatgagaaggcaaccactgtg
gaactgaaggatgagagctctgccatcgactctgaggttgcagctcctgaagatcccacg
tttgctgtagggaagaaacccaggagagcggctgtaaaacaattgattgttcacctgaag
gttttctcaaagtttaacaacccaagatctctctacctggaacccaagctgaaggaattg
tatacacagttgctatgtcatcattaccaggatgtgcagaaaatcgccttggaatgtctg
ctcacttacaaacacccacacctgttgccttacagggaaaacctccagcgactgctagag
gacaagagcttcaaagaagaaatcattcacttcagcattgcagaggagacaaccattgtg
tcagccccacacagggctgagctcattccagttataatgaggattctttatgggcgcatg
aggagcaaaactggaaacaaaacacaaggccgagcagcggcagggacacgaatggccatc
gttctaaacttcctggctggctctttgcctcaggagatagacgccttcctggatcttctc
ctcgagcctgtaaagcatttaactgagggatcctgtctgtgcacagtattacagtcggta
aagtcactggatatgtcaaaggttttgcccctagggcgtcagcacggtctgctaaacggc
attgaattggtgatgaaaaaactgggccatctaatccaagactacctgctgaaactgctt
cagattgtactgtgcatgactgcatctgtatcacaaattcttcagctaagagaccaggtc
cagccgaggtgcctaaaccagctgaaatatttgaggcgcctgggaataaatcagactgct
gctttcttttctgattttgagtcctatgcgttcacggtggacgaggttgacgcagtgttt
catagtgtggtgtggccacagatcaacaggctggccactgaagggcagtacgcaccaact
cctctcctgaaactcatccatatctggagcaagaattctaggtacttccttctccttgcg
aaacagcttcccgatcacccagagtctgacgttctgactaatgtctttgccttactgtcg
tccaagaacatcgcagatcccacggtaacggttgttatggatattgttgacaatctgctg
agtacacccgacttcacgccgacggctcaagcgagcaccctgaccgtaaatgatgccatc
tttccagagccgtctgccactgcagaagattctccgagcatggggatatgtcttattctg
cctcatatttccgctattctccaacacctcaacaaggccgttggaaataaggaccggatg
aagaggaagaaattccgaacacaagtcagtaaagatctgagtatcctttcaagaataagt
aggtttgtacaggataaggagcagagcacggttctgatcaatctcttaatgccctatctc
tccaagccaaacacatcacaggacactgagattgacatcctgcaaaccattcagaacctc
ctgcaacactgctcaaacccttccaccttcgttaagcctctggctgccctattctctgtc
attcagaacaagctttctcgccagactctgtgttcagtctttcagaccttggcagatctg
gatggcagtctagcatacattgcggagatcgtcactaagttaaatagcttcgatcgacag
caccttgatgacattgattttgacgagcgcctgttcgcattccaactcgcgactagcact
atcaaagagatgaaaaggttggatatggtatatctgatgccagtgatgcacaactgcttc
tattccattcagttaggtgagatgactctaagtgacagtgcgacgctttgcttgagtgca
gttgtccaacaagtggcttcagttgactgctcggaggaggaatacaaggaggtggtcacc
cgcactctgctggagactttaaggaattgcctaaaaacaaagattgagagtgttcaacaa
gaatacacgacactcctttgctgtttaatccgcacgttccctcaaaggttggaattccag
gacctggtacagctaacagaccatgatccagaaatggacttctttgagaatacaaagcac
atacagattcacaggcgagctcgtgccctgaaaaaactagcgaagcagcttgatgaggag
aaaattactctgtcttctaaatctttggtcaactacatcctgccatatgctacttcaata
ctgttcaatgaaaacatgctgaagtatgagaacatgaccacggcatctgtggaacttgtc
ggagcttcctgcaagcatctttcctggtcaccgtatatgtattacgtcaaacgctacatt
cacgttctgcaaactggacagatcaatcagaaattggcggtcagtttgctactgtccgtg
ttgcaagcctttcactttgacccagagagcctgcagaaggagcttgaagcggttcagaag
actatagatgaaaacgctgttgaaggagatgaggaagaattgactgaagctatggaattg
gaagatgctattgatgaagaaaaagaagtatttgcagaaacattaaatgaagataatgca
gtgcataatgaagactcagcaggcaaaaatatcctaacgaaaggggcaaagaagcctgtc
gcctctcaacccaagaataaacaggagctggaaaatctgattgagcatatccaaacgtct
gtcacaaacaacatcctgcccaagctgcagaaatgtttaattgcaaaggtggaaagagat
gagcagcataagttggtgaaatcgaaaatagtcaatgatgaagagttggtgcgtattcct
atagcgtttgccatggtcaaactgatgcagactctgcccaaggaaatcatggattcgaat
ttacccagtatcctcattaaagtctgtatgctgttgcgaaaccgagcacaggagatccgg
gatgttgctcgcaataccctgactaaaataatcgagactttgggcccaggataccttctc
taccttctcaaagagatgcagtcaactttaatcaaaggctatcaggttcatgttctgacc
tacacggtctatatgctcttaaagagccttgtacctaaacttaacagtgccgatttagac
ccttgtatggatgttctcatctcgatttttaaccatgagctgtttggtgaaattgctgaa
gagaaagaagtgagaggaattgtgagcaaagtgatggaagcgaggagaagcaaaagctac
gactcctatgagattctggctcagtttgtggggaaggctcaagttactaagctgatactg
ccactgaaagagatattggagaacaccaccatccttaagcaagctcgaaaggttcaggaa
acatttaaccgcattgtgtctggtctgttgctgaatgaggaaatgacggccgactccatc
ctgttactgagccatggcttggtgacacagagcttaccattgatggcaaagagaacaaag
ggtaaacgcaagaaggctttcgaatcgcgcgctggtctgaagccccagagctgcctctta
ctgccccccacaccgacccgtcaaggcgagaaagctgccaccagcacaaagaccaacatg
cacatcctggtcgacaccggcctgaggttgttgcatatgagtttgaaaagatcaaaagtg
aactcttcagaggaccacattttggagatgatggatccatttgtgcaggtgttgatcgac
tgtcttcagtccatgcatgtaaaggtgatcacagctgctttgcagtgcctcacctgggta
ctgaaatttccactgaggtccactgaaacactggctgatcagctgacccaacaactgttc
ctgttactgaaggattacgccaaggctggagcagggaagggagagaactttcacctggtt
gtgaactgttttaaggcaattactatcctagtgaggaacatgactggatgcacaataact
gataaacagctgcagatcttgttgggatacgctgaggaagatatttacgactcatcacgt
caggctgcggcttttggacttttgaaggcaattctgtctagaaaactgcttgttccagag
atgaatgatgtgatgcagaaagtagccaagcttgctgtgactggacagagtgagctagtt
cgcgtgcagtgtcgtcaggtttatgtaaaattcattctggattatcccctgggtgataag
ttgaagcctcatcttgaattcattgtggcacagctttcctatgaacatgagataggaaga
gaatctgctttggaaatgttggcatatatcttccagtcattccctcaggatctgcttcag
cagtactgtgctcttttcttcgtacctgcggctctgatgattgttaatgacgattctccg
aagtgcaagaagatggcagctctagcagcccggtcgctcttgagcaaggtcgatgagagg
cacaaggacttgatgttttctttggtcctgaagtggtttgaaagtggaaagatctctcat
cgtcgattggctgcccatgcctgtgggctttttgttgaagctgaaggggtcgcctttgag
aaacgtattgcgactgtcctccccatcctccaaaccgagattaatcctgaaagatttcaa
aatatccatgaggaaatggaagagaaggctgcagaccgtttgctgttcagcctcttgacc
ctggttgtgaaactagtgaaggattgcaacctcattgagctgcgcaaaccagataccatt
ctctccgctatctggggtcacgtccaaactcacttgcggtacccccactcctgggtttgg
ctcacttcagcccagctcttcggaatgctgtttgcctctcatcagcctgaggaattggtg
gccaagtggaacactggcaagtcatcgatcacagcaaagaattcattggaggcaccagcg
acacgctttctgctggaagagctggacgtaaagattgaagacttggctttagccttttgc
gatcagctgaattcaaagttcctggatcaaacattgggtgaacaggtgataaagaatttg
ctgttcgtagccaaagtcatgtacctgttggagtctgttgatcgcggagatgcgaagaag
gaagaggggacagcggaaagcgatgaagaaattggagctgaggagactggggaagaagag
gtggcaggaaaaggagcttccaagaaatcaaccctgatgtggctgattaaaaaactctgt
attctcgtcaagcgagaagcagcccacagccccaaaattcctttgaagaggacctgtgtc
tttaagttccttggagcgattgcagtaaaccttggaatggacggagtgaaaccttatctc
ccaacaattattgcacctctttacagagaattaaacagtacttatgcagatcaagacccg
acactccggaatctttcccaagagatcattgagctgctgaagagactggtcgggctggaa
acattctctatgggttttgcagctgtgcaaaaacaggccagccagaaaagagccttgagg
aaaagacagaaggccttacagaccgttgcaaacccagacattgccgcaaggaagaaattg
aagaagcacaaaaatagaagtgaagccaggaaaagaaaaattgaagtccttcgaccaggc
tataaggcaaaaagggcccgaagccacgcgttgaaggatttggccatcgtggagtga
DBGET
integrated database retrieval system
