Scyliorhinus canicula (smaller spotted catshark): 119955123
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Entry
119955123 CDS
T11175
Symbol
cnot4b
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119955123 (cnot4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
scau03000
]
119955123 (cnot4b)
03019 Messenger RNA biogenesis [BR:
scau03019
]
119955123 (cnot4b)
04121 Ubiquitin system [BR:
scau04121
]
119955123 (cnot4b)
Enzymes [BR:
scau01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
119955123 (cnot4b)
Transcription factors [BR:
scau03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
119955123 (cnot4b)
Messenger RNA biogenesis [BR:
scau03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119955123 (cnot4b)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
119955123 (cnot4b)
Ubiquitin system [BR:
scau04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
119955123 (cnot4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
Torus
DZR_2
Nup35_RRM_2
zf-CCCH_2
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
119955123
NCBI-ProteinID:
XP_038636947
LinkDB
All DBs
Position
20:80905057..81021450
Genome browser
AA seq
766 aa
AA seq
DB search
MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQELYKLNPNFLHQSSNTVDKNKNKLATQQRPNSSNKDAWPSLLSTAKAVNGLTLEHRKT
PPLLDNGSEPEHMTPDGPDTQLRPVDKPPEALSLGNGDNLQQIPTSETPSPPPGLTKPNP
VVPISSSNHNARSPFEGAAAESQSLFSDNSNFRHPNPLPNSLLYPTSSPSTHDWPTAPEP
QSLFTSETIPVSSSTDWQAAFGFGSSKQQEDDLGFDPFDITRKALADLIEKELSVQDQPA
NTGLTSPTSLQTPLQTANKGIGGFLTPSGATTANSIGNSFPNSILPRRFPTFQHRAVYNS
FSFPGQARYPWMAYPHNSMMHLNHTATPTSNSNFLDLNIPPHSTGLGGIPISDSGSNVAS
LNVKEWQDGLRALLPNININFGGLPNAASCSSVNHAAPTSANSTSLNWESGSGWMDPAII
TGCQWSVMGVPASTGNSLDALQDENPPHWLKSLQTLTEIDGPTAAQTGHSNPFNTQIPLH
RAGWAPYPPPSNPGNFHSPPPGFQTTFRPPNKTPTDLLQSSTLDRH
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgcagtcccgatgcaaaagaagaccctgttgaatgccctctctgtatggagccc
ctcgaaatagatgacatcaacttctttccatgcacctgtggttaccagatctgtcgtttc
tgttggcaccgtatacgcacagacgagaatggcctctgtccagcctgcagaaaaccatac
ccagaagaccctgcagtctacaaaccactttctcaagaagagctacagagaataaaaaat
gagaagaaacaaaagcagaatgagagaaaacagaaaatctccgagaaccgcaagcatctg
gccagcgtacgcgttgtacaaaagaacctcgtttttgtggtcggtctatcacaacggcta
gcagatccagaggttttaaaacggccagaatattttgggaagtttggtaaaatacataaa
gttgttatcaacaacagcacgtcatatgcaggttcacagggtcccagtgctagtgcttat
gtaacctacatacggtctgaagacgcactaagagcaatacagtgtgtaaataatgtggtg
gtggatggcaggacacttaaggcatctttaggtacaacaaagtattgcagctatttccta
aagaacatgcaatgtcctaaaccagactgtatgtatttgcatgagctaggagatgaagca
gccagtttcactaaagaggaaatgcaggcaggtaaacatcaagagtacgaacagaagctg
ctacaggaactttataaattgaaccccaactttttgcaccagtcgtccaacacagtcgac
aaaaataagaacaaattggctacacagcagagacccaacagtagtaataaagatgcctgg
ccgtcattactgagcacagctaaagcagtcaacggtttaacactcgaacacaggaaaacg
cctcccttacttgataatggttcagaacccgaacacatgaccccagatggtcctgacaca
caactcagacctgtggataaaccaccagaagcactcagtctaggaaatggagacaattta
caacagatccccaccagtgaaacaccttcaccaccaccaggattaacaaaacccaaccca
gtcgtccccattagttcatctaatcataatgcacggtctccttttgagggagctgcagcc
gaatcccaatccctcttttcagacaacagtaacttcagacaccccaaccctctcccaaac
agcttgctttaccccacttcatcgccatcaacgcacgactggccaacagcaccagagcca
cagagtctcttcacatcagaaacaatcccagtatcctcatcaacagattggcaagcagct
tttgggtttggctcctccaaacagcaagaggatgacctgggtttcgatccattcgacatc
accaggaaagccttagcagacctgatagaaaaagaactctcagtccaggaccagcctgcc
aacacgggcctcacttcccccacctcactacagacccctctgcaaactgcaaataaaggc
attggtggcttcttgaccccttctggtgccacaacagccaactccataggcaactctttc
cccaactccatattaccacggaggttcccaacttttcaacacagagctgtctacaactcg
ttcagttttccgggtcaggcacggtacccatggatggcctatcctcacaatagcatgatg
cacttgaaccacacagcaacgcccacctcgaacagtaatttcttggacttaaacatacca
cctcacagcacaggacttggtggaattcctatatcagacagcggcagtaatgtggcaagt
ttaaatgtgaaagagtggcaggatggtctacgggcactgttaccaaatattaacatcaat
tttgggggactaccaaatgctgcttcctgctcttcagtgaaccatgcagcaccaacctca
gccaacagcaccagcctgaactgggagagtgggagtggctggatggacccagcaattata
acaggatgtcagtggagtgtaatgggtgtgccagcatctacagggaacagtttagacgct
ctgcaggatgaaaaccctccacattggctgaagtcgctccagacgctgacagaaatagac
ggccccacagcagcacagactgggcacagtaaccctttcaacacacagatacccttacac
agagctggctgggccccctaccctccaccctccaaccccggcaactttcactctccacct
ccaggcttccagaccaccttcagaccccccaacaaaacccccacagatcttctacagagc
tctacattagatcgtcactaa
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