Scyliorhinus canicula (smaller spotted catshark): 119955159
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Entry
119955159 CDS
T11175
Name
(RefSeq) neuronal PAS domain-containing protein 3 isoform X1
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
scau03000
]
119955159
Transcription factors [BR:
scau03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
119955159
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS
PAS_11
PAS_9
PAS_4
HLH
bHLH_NPAS4
Motif
Other DBs
NCBI-GeneID:
119955159
NCBI-ProteinID:
XP_038637027
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All DBs
Position
2:complement(78685770..80270051)
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AA seq
956 aa
AA seq
DB search
MIRIFPDFSVQVTAATGGGGGAVTATPGVGRTAAATTAAANGTPQNVGLSSYQQRGPSFC
YQASVMPSLQALRKEKSRDAARSRRGKENFEFYELAKLLPLPAAITSQLDKASIIRLTIS
YLKMRDFANLGDPPWNLRMEGPPPNTSVKDGQSNGCLDFASLVLLSMRSCWPTALGAQRR
RSPSSVAINIFEQNLGSHILQSLDGFLFAVNQEGRFLYISETVSIYLGLSQVELTGSSVF
DYVHPGDHVEMAEQLGMKLPPGRGILSQGTAEDGASSASSSSQSETPEPVESTSPILLTI
DNSLERSFFIRMKSTLTKRGIHIKSSGFKVIHVTGRLRLRVSLSHGRVLPTHIIGLVVVA
HALPPPTINEVRIDCQMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYYFIHAEDV
EGIRHSHLDLLNKGQCITKYYRWLQKNGGYIWIQSCATIAFNAKNATEKNVIWVNYVLSD
FEYKDVPMDIAQLPNLPEKTSESSETSDTESDSKENSGIAEDNENSKSDEKGNQSENSDD
PEPDRKKQSGNHSDHEMNCNDDDNNSSNQGSRDSEDSFENSDFESQKAAEDSFGTFGSLQ
IKVERYAGSESEMRLPNRESVTSDSAKDSDSAGEVNIQSSSKHQKRKKRRKKQKVGSVTR
RRLSSASSPSGLDSNIVDQSQLLSSPNSASVLKIKTEITEPINFDNDSSIWNYPPNREIS
RNESPYSMTKPPSSEHFPSTQASTSLHVTIPDSVLTPPGTENTASRKIQFGTSSNTTLVA
VTDPLSPPLSTSPRDKHLSSTSTTSSVLYTSDLETLQRLQAGNVVLPLVHRVTGTLPATS
TTPQRVYTTGTIRYAPAEVTFAMQGNLLPNTHAVNFVDVNSSSFGLEPKTPMEMLYHHVH
RINMSGPFGSTVSGASLAQMPAGNVFTTAEGLFSTIPFPVYSNGIHTTQSLERKED
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
atgattaggattttcccggatttcagcgtacaagtaacggcagcaactggtggaggaggc
ggcgcggttactgctacacctggtgtggggaggactgccgccgccaccaccgctgctgct
aatgggacaccccaaaacgtggggctttcatcctaccaacaacgaggaccttcattctgc
taccaagcttcagtcatgccaagtttacaagccttgcgaaaggagaaatctcgagatgct
gctcgatcacgcagaggaaaggaaaactttgagttctacgaattggcaaaactgctgcct
ctcccagcagccatcacaagtcaattagataaagcatcgataattcgtctcaccattagt
tatctgaaaatgagggactttgcaaacctaggtgacccgccatggaatttgaggatggag
ggacccccacctaacacatctgtgaaagatggtcaatcgaatggatgcctggattttgct
agcctggtcctcttgtccatgaggagttgctggcctacagctttaggagcacaacgcagg
aggagtccaagctccgtggccattaatatcttcgagcagaatttgggaagccatattcta
cagtctctggatggatttttatttgcagtaaatcaagaaggaagatttttatacatctct
gaaactgtctctatctatttgggtctttcgcaggtggaactgacaggcagcagtgtgttt
gattatgtccaccctggagaccatgtggagatggcagagcagctgggcatgaaacttccc
cctgggcgaggcattctctcacagggtaccgcagaggatggagccagctcagcatcttcg
tcctcacaatctgagacccctgagccagtagaatctacaagcccaattttactgactatt
gacaacagcttggaacgatcattttttataagaatgaagtcaacactgaccaagagagga
attcatatcaaatcatcaggctttaaggtcattcacgtaactggacggttacggttgaga
gtttctctttcacatggacgcgtgcttcctactcatatcataggtctagtagttgtggct
cacgctttgcctcctcctactattaatgaagtcaggattgactgccaaatgtttgtcacc
agagtcaatatggacctcaatattatttactgtgaaaaccggattagcgactatatggat
ttaactcctgtagatattgtgggtaaaagatgctattacttcattcatgctgaagatgta
gaaggaatcaggcacagtcacttggatttattgaataagggccaatgtataactaagtac
tatcgctggctacagaaaaatggaggctatatttggattcagtcctgtgccactattgca
ttcaatgcaaaaaatgccaccgagaaaaatgtcatctgggtcaattatgttctaagtgac
tttgagtataaggacgtcccaatggatattgcacagcttcctaatcttcctgagaaaacc
tctgaatcatccgagacttctgataccgaatctgattcgaaagaaaactcaggtattgct
gaggacaatgagaattccaagtcagatgagaagggaaaccaatctgaaaatagtgatgat
ccagagccagacaggaagaagcaatctgggaaccactcagatcatgaaatgaactgcaat
gacgacgacaataactccagcaaccaaggcagcagggacagtgaggatagctttgaaaat
tcagactttgagagtcagaaagcagccgaggacagctttggcacttttggttctctgcag
attaaagtagaacgatatgcaggcagcgaatcggaaatgcgcttgccaaaccgtgaatca
gtgacctcagacagtgccaaggattcagacagtgcaggagaggtgaacattcagtcttcc
agcaaacaccagaagaggaagaagaggagaaaaaaacaaaaagttggcagtgttacacgt
agaaggctgtccagtgcttcaagccccagtggacttgactcaaacatagtagatcagtca
caactgctgtcttcaccaaacagtgcctcagtgcttaaaattaaaacagaaataacagaa
cctataaattttgataatgatagcagtatttggaattatcctcccaatagagagatctca
aggaatgaatccccctatagcatgaccaagcccccaagctctgagcacttcccctctaca
caggccagcactagtttacatgtcaccattccagactctgttcttaccccaccagggaca
gaaaataccgccagtcgtaaaatccagttcggcacctcatctaacaccaccttagttgct
gtcacagaccctctgtctcctcctctgtcaacctccccacgagacaaacatctcagcagc
accagtaccaccagttctgtgctatacactagtgacctagaaacactgcagaggttacag
gctggtaatgtggtgctgcccctggttcatagggtgacaggaactctacctgccaccagc
actactcctcagagggtctataccactggcaccattcggtatgccccagctgaggtgacc
tttgccatgcagggcaacttgctgcctaatactcatgctgtcaactttgtagatgttaac
agttccagttttgggttagagcccaagacgccaatggaaatgctttatcaccatgtacat
cgaattaatatgtcagggccattcgggagcactgtgagtggggctagtttggcccaaatg
cctgcaggaaatgtgttcacaacagcagagggactcttttccacaattccgtttcctgtg
tacagtaatggcattcacaccacacaatcattggaacgtaaagaggattaa
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