Scyliorhinus canicula (smaller spotted catshark): 119955307
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Entry
119955307 CDS
T11175
Symbol
arid2
Name
(RefSeq) AT-rich interactive domain-containing protein 2 isoform X1
KO
K11765
AT-rich interactive domain-containing protein 2
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
119955307 (arid2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
scau03000
]
119955307 (arid2)
03021 Transcription machinery [BR:
scau03021
]
119955307 (arid2)
03036 Chromosome and associated proteins [BR:
scau03036
]
119955307 (arid2)
Transcription factors [BR:
scau03000
]
Eukaryotic type
Helix-turn-helix
ARID
119955307 (arid2)
Transcription machinery [BR:
scau03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
119955307 (arid2)
Chromosome and associated proteins [BR:
scau03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
119955307 (arid2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ARID
RFX_DNA_binding
TSTD2_N
Motif
Other DBs
NCBI-GeneID:
119955307
NCBI-ProteinID:
XP_038637316
LinkDB
All DBs
Position
20:27551474..27720045
Genome browser
AA seq
1813 aa
AA seq
DB search
MKKMANSTGKMQPSDPRRKRLAFLEELRQFHHNRGTPFKKIPIVCGKELDLHTLYTRVTS
LGGFAKVTDKNKWSQITEELNFPKGCPNAAFALKQYYLRYLEAYEKVHHFGEDDDELSSG
NQRGPVPVGGVPSSYSYQQHILSDYIRQCYGLNTEFVTLGDYNKLVLSLLSGLPNEVDFA
INVCTLLSNGNKHIMQLEKDPRITTILLAHAGIFDDSLGTLSSVFGAEWKEKTGRDFIKF
WKDNVEDDEIRELIFRNNGSQGTSIEIDMEASLFHPPHKVGINDVEGQRVLQIAVILRNL
SFEEGNVKLLAAHRTCVRFLLLCSHCQYASLKQLGLDTLGNVAAELQLDPVDFKSTHLIF
HTVTKCLLSCDKCLKMRGMEILANLCRAEDNADLICEYVDQESYKEIICHLTLPDMLLVI
SSLEVLYMLTELGEVPCTKIVSVEKSVDMLVCLVSVDIQSFESDAPSAVKLIEYQSSNHR
VISEIRPQAMAHLQHVPTHITPATAARVGSALVTPPGIEVDSEKFVCQWLNAHFETSLEG
SISRVDLYSEYLSVCSKLARGGILTSSGFNRCLRSPFPTHTVKRIEDPNNNGQAQIHIVG
IQRRATPLPMQAHYQQSPTVPSVMAELTQNPPPSAQTVVNHFQRMPIGNLSTGQPGSQMI
YAFQPSVPAQNVTKMPQDQTGLAQPHQNAAVTLEQSRTPISSEAVRCTVVQSPPFSSHST
VSYSLTGTSIPQGTVIQNHATVTTPSSVTMTTSQQVLRHPQFFQQQVPGHQLSIPTVSLN
QVNTASTTTVTVIQQTVSQSHAAIGRVQSMPATTVTVSQGQLLSGAVSHSGQAPRHQPKT
NNQQDTVLLAPQHYSSTPCPTAVSGAAVQNFQVSTGQVVAIAGVQSPPAPRMCFQNIAPK
PAGMPLQQVQSTIMQQQPQQSVRVIVSQPAQQGQSFSPAIHQILLTNPASIQAGQTIHLA
GKANVTPSSSPSPVPVNNTQVQMGLVTQPSTPQMQGPQTVSKMLSVKRQQQQQQHPQKQF
QMQLQSQQTGSGASQPPSGESSLIKQLLLPKRGPPTPGGKLILPAPQMPPPSNTRAPSPQ
VVYQVTHNQASNFGVQAQGQQLVVGQQNVQLVQGPIHSPGSVQTVPIPHMQILPGQLISA
SNAAALLQGTTGNQVTITVVPNTTFAATAGSHGSGTQFIAPAGIAVSGSQAGVGLQVQTS
PPILTSQSGQVKNAESGIAFTGDKIICQKEEEAKDTTDLHLHERKIEIRENPSCSEGVTP
NGSLKESETETTKLVNGKKHDNSHLPPSNSGIAQSEPSQCTLASNGPMTGVSQNVTNGKL
NVEHTEMQEIKKDLLKMPMVNGICDFEKGDGSHLSKNIPNHKASNHVENGDVAAQEQWGN
MGCNQQNTAKSGHLTKVHNRPVSIGNSSASCTALSSSVDQKIRGTNSGLSNGPTTAGISS
AVPQLQQCPSSVVSVQSSLSNTPQVHYSPVPHQPGPVAIHSVQLYQTPTANGSTDCQLLK
RSAECKDNISGIPNKVGVRIVTISDPNNAGCSSTMVAVPVGSDSGTIAKVAMDNVTPQNQ
HLPVLPQGIISQSAPLAVSSAPPVAAQISSQPLQHQVLSLHHHGELTRKPGQNFMCLWQA
CRRWFDSPSQVYYHAATEHGGKDVYPGACMWEACEHFPRQRFSFITHLQDKHCTKEALLT
GLKRLEERTQTGNQQTSNKQTSSGAASAPKAQKALVNHPSAALVALRRGSRNLVFRDYMD
EKEGPITKHIRLTAALILKNVAKYSDCGRRLLKRHESQLSVLALSNMEASSTLAKCLFEL
VHLEQLQQPENKL
NT seq
5442 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagatggcaaattcgacggggaaaatgcagccttcagacccgaggagaaagagg
ctggcgttcctggaggagctgcggcagtttcaccacaacagagggacgccttttaagaag
ataccaatagtgtgtggcaaggagctggatcttcacactctctacaccagagtcaccagc
ctcggaggattcgccaaggtgactgacaagaacaaatggtcacagataacggaagagtta
aactttccaaaaggttgccccaatgcagcgtttgccttaaaacaatattacttacgttac
cttgaagcttatgaaaaggtacatcactttggggaagatgacgacgagcttagttcaggt
aatcagcggggaccagttcctgttggtggggtaccatcatcatacagttaccagcagcat
atattatcagattatattcgacaatgctatggacttaatacagagtttgtaacacttggt
gactacaataaactggtgctttcccttctgtctggactgcctaatgaagtggatttcgca
attaacgtttgcactcttctctcaaatgggaataagcacatcatgcaacttgaaaaagat
cccagaatcaccaccattttgcttgcgcatgctggaatttttgatgacagtttgggtacc
ttgtcctctgtatttggagcagaatggaaagaaaaaacggggagagattttattaagttc
tggaaagacaatgttgaagatgatgaaatacgggaactcatttttaggaacaatggatca
caaggtacgagtatagaaatcgatatggaggcatctttattccacccccctcataaagtg
ggcatcaatgatgttgagggacaacgtgtacttcagatagcagtaatccttcgcaacttg
tcatttgaggaaggaaatgtgaagctattggcagctcaccgtacatgtgtccgtttcctg
ttgttatgttcccattgtcagtatgcttcactcaagcaactggggctggacacattgggt
aacgtagcagctgagcttcaattggatcctgttgattttaaaagtactcatctaattttt
catactgtaactaaatgtctactttcctgtgacaagtgtttgaagatgagaggtatggaa
atactagcaaatctatgtagagctgaagataatgcagacttgatatgtgaatatgtcgat
caagaatcttacaaggagatcatatgccatctaactttacctgatatgctgctggtaatc
tcctcattggaggtgctatacatgctgactgaactaggagaagtaccctgcacaaagatt
gttagtgtggaaaaaagtgtggatatgttagtgtgtcttgtgtcggtggatatccagtca
tttgagtctgatgcacctagtgcagtgaaactaattgaatatcaaagttctaaccatcga
gtaatctccgagatcaggccacaagcaatggcgcatttgcagcatgtaccgacccacatc
acaccagctacagcagcaagagttggctctgcattagtaacaccaccaggaatagaagtt
gacagtgaaaagtttgtctgccagtggttaaatgcacattttgagacctcattggaaggc
tccatctcacgagtggatctgtactctgaatatctttctgtgtgcagtaaattagctcgg
ggtggaattctgacttcttcaggatttaacagatgtctccggtctccatttccaacccat
acagtaaaacgaatagaagatcccaataataatgggcaagcacaaatacacatagtaggg
atccaaagaagggctacaccacttcccatgcaggcacactaccagcaatcaccaactgtt
ccctccgttatggcagagctaacgcagaatccacctccctcagcacagaccgtggtaaac
cacttccaaaggatgcctatcggtaacctttctactggtcagccaggatctcaaatgatc
tacgcttttcaaccaagtgttccagcacagaatgttaccaagatgccacaagaccaaact
ggcctggcacaaccgcaccaaaatgctgcagtaactcttgaacaaagcagaactccaatc
agtagtgaagcagtgaggtgtacagttgtccagtctccaccttttagcagtcattctacg
gtttcctattcattaactggaaccagcataccacagggaacagtgatccaaaaccatgcc
acagtaacaacaccgtcatcagttacaatgacaacttctcagcaagtgcttcgccatccg
cagttctttcaacagcaggttcctggtcaccagctgtccataccaacagtatctttgaat
caggtgaataccgcttcaacgacaactgttactgtgatacagcagactgtctctcaaagc
catgcagcaattggcagagttcaaagtatgccagccaccactgtcacagtttcccaagga
cagctattatcgggtgcagtatcccactctggacaggcaccacgtcaccagccaaaaaca
aataaccagcaggacactgttctactggcacctcagcactattcttccaccccatgtcct
accgctgtatctggtgctgctgtgcaaaactttcaagtctcaacaggtcaagtggttgca
attgctggtgttcaaagtcctccggctcctaggatgtgtttccagaatatagcaccaaaa
ccagcaggaatgccacttcagcaagttcagtctaccataatgcaacaacaaccccagcaa
agtgtacgtgtgattgttagtcagccagctcaacagggacagagtttttctcctgccatt
catcaaatattgttgacaaatccagcttctattcaagctggccaaactattcatttggct
gggaaggcaaatgtgaccccttcatcctcgccatctcctgtacctgtcaacaacacacag
gtacaaatggggttggttactcaaccttccactcctcaaatgcaaggacctcaaacagtg
agtaagatgctatctgtgaaacggcagcaacagcagcaacaacatccccaaaaacagttc
cagatgcaacttcagtctcaacagacaggtagtggagctagtcaacctccttctggggag
tccagcttaataaaacaattacttcttccaaaaagaggacctcctactccaggtggtaaa
cttatattgcctgctcctcaaatgcctcccccttctaatactagagctcctagtcctcag
gtggtctatcaagtgactcacaatcaggcaagtaattttggagtccaagcccaaggtcaa
cagttagtagttggccagcaaaatgtgcagcttgttcaaggtcccatccattcaccaggg
tcagtgcagacagtgcctattcctcatatgcagattttaccaggtcagttgatctctgct
agtaacgcagctgctcttctccagggaacaactggcaaccaggttaccattactgttgtg
ccaaataccacctttgcggctacagctgggagtcatggcagtggaacgcagttcatagcc
cctgcaggaattgctgtcagtgggtcacaagcaggagttggcctccaagtgcaaacatct
ccaccaatcttgacatcacagagcggacaggttaaaaatgcagaatctggaattgcattc
acaggtgacaaaataatttgccagaaggaggaagaagcaaaagatacaacagatttacat
ctacatgaacgtaaaattgaaattagggaaaatccttcctgctcagagggagttacgcca
aatggcagcttaaaggaaagcgaaacggagacaacaaaacttgtaaatggaaaaaaacac
gataattcacatctacctccatctaactcagggatagctcagtctgagcccagccagtgc
acactggcctcaaatggacctatgacaggagtaagtcaaaatgtaaccaatgggaagctg
aatgtagagcataccgaaatgcaggaaattaagaaagatcttttgaaaatgcccatggtt
aatgggatctgtgattttgaaaaaggagatggttcacatttaagcaaaaacattccaaat
cataaagcttccaatcatgtggaaaatggtgatgtcgctgcacaggagcaatggggcaat
atgggctgtaatcagcaaaacactgccaaaagtggtcacttaaccaaagtgcacaataga
cctgtttcaatcggaaattctagtgctagctgtacagccctttcaagctctgttgaccag
aaaataaggggcacaaactcaggattatccaatggacctacaacagcaggcataagttca
gcagtgcctcagcttcagcaatgtccaagttcagttgtttctgtgcagtcttcactttct
aacactccccaggtgcattactctccagtcccacaccaacctggacctgtagcaatacat
tcagtccaactttaccagactccaacagccaatggttcaactgattgtcagcttttaaaa
aggtcagctgagtgcaaagataacatatcaggaataccaaataaagtgggagtaaggatt
gttaccatcagtgaccctaacaatgctggctgcagttcaacaatggtggctgtgccagta
ggatctgattccggtactatagccaaagtagctatggacaatgtaacaccgcaaaatcag
cacctgcctgttcttccacagggcataattagtcagtctgctcctttagcagtttcatca
gcaccaccagtagcagcccaaatcagttctcagcctcttcaacatcaagttctatcattg
catcaccatggcgagctaacaagaaaaccaggacagaatttcatgtgcctgtggcaagca
tgcagaaggtggtttgattccccatctcaggtgtactaccatgcagcaactgagcacgga
gggaaagatgtgtatccaggggcatgtatgtgggaggcctgtgaacattttccccggcag
agattctccttcattactcacttacaggataaacactgcacaaaagaagcactccttaca
ggactgaagaggcttgaagaacgaacacaaactggaaaccaacaaacttcgaataaacag
acatcctctggagctgcttccgctcctaaagcacagaaggcacttgtgaatcaccctagt
gctgctctagttgcattgcgaagaggatcaaggaatcttgtatttagagactatatggac
gaaaaggaaggtccaataacaaaacacatccggttaacagctgccttaattttgaaaaat
gttgctaagtattcagattgtggtcgcagattactaaagcgacacgagagccaattgtct
gtactagccctcagtaacatggaagcttccagcacgcttgccaaatgccttttcgagctt
gtgcatctagagcaattgcaacaaccagaaaataaactctga
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integrated database retrieval system
