Scyliorhinus canicula (smaller spotted catshark): 119955459
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Entry
119955459 CDS
T11175
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4 isoform X1
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119955459 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
scau03041
]
119955459 (prpf4)
Spliceosome [BR:
scau03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
119955459 (prpf4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_Gbeta
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
PRP4
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_Aladin
Beta-prop_DCAF4
Beta-prop_TEP1_C
Beta-prop_SCAP
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_WDR41
Beta-prop_Vps41
Beta-prop_IFT122_1st
WD_LRWD1
Beta-prop_IFT140_1st
Beta-prop_WDR11_1st
WD40_like
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
119955459
NCBI-ProteinID:
XP_038637577
LinkDB
All DBs
Position
21:complement(19694312..19739371)
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AA seq
527 aa
AA seq
DB search
MHRAWHLLGCWAWVSFLKSQKMSDDDDIPLPKRSRIYYGSLEEKERERISKGDGGYLGRD
AVKAGIEAGHINISSSEFYDVEDHVSERQAEVLAEFERRKRARQINVSTDDTEVKACLRA
LGEPITLFGEGPAERRERLRNILSVVGADALKKTEKTDDAKKIRQEHQQTWYHEGPSTLK
TARISIARFSLPRAVKRLEEARANKEIPEASRTARQQELHKGLRALNNFCSQIGDDRPIS
YCQFSPNSKLLVTASWSGLCKLWGVPDCSLIRTLRGHSTNVGAIVFHPQATISLDEKDCN
MASCAADGSVKLWNLESDEPVADIEGHTMRVARVAWHPSGRFLGTTCYDHSWRLWDLEAQ
EEILHQEGHSKGVYDIAFHRDGSLVGTGGLDAFGRLWDLRTGRCIMFLEGHLKEIYGVSF
SPNGYHAATGSGDNTCKVWDLRQRKCIYTIPAHQNLLSAVRFQPTDGHYLLTGAYDNTAK
IWTHPGWSPLKTMAGHEGKVMGLDISPNGQLIATCSYDRTFKLWTSE
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgcaccgagcctggcacctcctgggttgctgggcctgggtttcatttctcaaatcacaa
aaaatgtctgatgacgacgatattccgttacccaagagatctcggatttactatggaagc
cttgaagagaaggagagggagaggatttccaaaggagatggaggatacctgggaagagat
gcagtgaaagccgggatagaagccgggcacattaacatatctagtagtgagttctatgat
gtggaagatcacgtcagtgagaggcaggctgaggttctagcagagttcgagcgcagaaaa
cgagcacggcagattaacgtttctacagacgacacggaagtgaaggcctgcctgcgagcg
cttggagagccaatcacacttttcggggaaggaccagcagaacgacgagagaggttgcgc
aatatcctgtctgtggtgggtgctgatgccttaaagaagacagagaagacagacgatgca
aagaaaatccgacaggagcatcagcaaacctggtatcatgagggccccagcaccctgaag
actgctcgtatctccattgcacgcttttctctgccaagagctgtgaaaagattggaggaa
gcccgggctaacaaagaaattccagaagcttcacgaacagcacggcagcaagagctccac
aaaggtttacgggctctaaacaacttctgcagccaaattggtgatgaccggcccatctcc
tactgccagttcagccccaattccaaactcctggttacagcttcctggagtgggctctgt
aagctgtggggtgttcctgactgcagcctcatccgcacactgagaggtcacagtacaaat
gtgggtgccattgtatttcatccccaggccaccatctcgcttgatgagaaggactgcaac
atggcatcatgtgcagctgacggctcggtgaagctctggaacctggaaagtgatgaacca
gtcgctgacattgaagggcacacaatgcgagttgctcgagtggcatggcatccatcgggc
agatttctgggcaccacatgttatgaccactcctggcgactgtgggatctggaagctcaa
gaggaaatcctccatcaggaaggccacagcaagggtgtttatgacattgccttccatcgt
gatggctctctggtgggaactggtggcctggatgcctttgggcggctgtgggatttacgg
actggtcgatgcatcatgttcctggagggacacttgaaggagatctatggggtcagcttc
tctcccaatggataccatgcagcaactggaagtggcgataatacctgcaaggtttgggac
cttcgacagcgaaaatgcatctacaccattccagcgcaccagaacctcctgtcagcagtc
aggtttcagcccacagatggacattacttgctgaccggtgcttatgacaacacagcaaag
atttggacacaccctgggtggtcacctctcaaaacaatggccgggcatgagggcaaggta
atggggttggacatttctccgaatggacagctgattgccacatgttcgtacgacaggacc
ttcaaactttggacatcggagtga
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integrated database retrieval system
