Scyliorhinus canicula (smaller spotted catshark): 119955535
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Entry
119955535 CDS
T11175
Name
(RefSeq) LOW QUALITY PROTEIN: protein transport protein Sec16A-like
KO
K20353
COPII coat assembly protein SEC16
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
scau04131
]
119955535
Membrane trafficking [BR:
scau04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
119955535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Sec16
Sec16
DIM1
Motif
Other DBs
NCBI-GeneID:
119955535
NCBI-ProteinID:
XP_038637736
LinkDB
All DBs
Position
21:complement(67964864..68036649)
Genome browser
AA seq
2130 aa
AA seq
DB search
MQSPTMQPPPPRSSSGVSSTAGAPMSGGAHNVFRRNAPYRRPNTPQSGAPATLPPVTDPF
GLGRTTQTDGSPSLQNAVNGGPQFPSRQDGSQLLWPNYAFGDAQVMFPGVPAALGERCEP
YGAPAPLPPAPRFGEAGSFSPAAPLQGAEAGLGLPPEPSYFHTGLGSENSEMGQARLQTR
PPHGQEGGQDPQSFPPAPSFPLPFQPGSSASSQWVASHGSRPPSVQNYFQPSDPQTQGFG
GYCALQPAPVPPHQNQAASSHYQQHHSQPLESHTQFPGAERHDAGRPSPFHQPPQLQHSF
PSPGFARSEDWSPGPPREPCQQHPVPLPGHQTDCPIPHLGPPVASDPGTVSMFFKGGEVE
NEETLVSEQQSGVCATLGDAFQPSTGPFFSAPQLPDLCTGGVEPRGVGPRPPAPCGVYSQ
GGGDPAGTADYTVPQGGGLVMEDEENSEFVQNQEVLPSESDRIPAGFQPVPGLVNPGPHS
ARNMGTGGGPPRNLETPDSAHHPLRSDSISSNHSSASHSSGSSLRRSQAQLSTFIQQESG
KPPTETPSRFFEQIDSSPLSRDPLHPGKEVESAGRPLYYSQLSQPPALSSPKPTATFQAS
ANSSFEPVRSHGHLTIKAVEVDQAKMVMELNQSTMSVMGQRLGAGPLDISPGNLEQPPDN
LENVHVPRPHSSLYPGTGTPESMARPASEEPHKRPSSRVAGVWVKSESPAATLWAQSELP
NFCAGIMLAPAAPAVPAAAKDPAVEVVQPPEGGGKDLNYSAPLGNMENPPQGTEDRVPKI
QANSSYATLLVPTPASPTPPVLLARPLQTSPHLPSPERPLRDQGDGQSVAFPTPVLLNPD
LVTTTQGSVHDQAPLNLATDGRLNPRQVAEASTANPAAPTSPPSSRAPPAAVTTPASNLH
PPAAGSKDETKNQVFDQPSSSTNCELLDFTLHRAPPPNQAVAGTNPAASLPLGAATQNPA
PCHTYTAGLYTNDKPGFYLQVTTDVQQQQQPIAAVTGQQAAPPPPPAHDQSKHLMGSVPV
SGQYPPAGYGYPGSGPPQPPVQQQLAAEAPVTATGVLQPPTIHEVMPQQPYPPAQPHPAY
GYTYPYMCQDYGADPQQPYAVPYPSYPSLDPRVGQQISYPLMDSRGNHPYYQDDPYRRYG
RYGRYDANNVSYREPEREKTSRPSSRASQSSNRPSSRQGCAEDPYNGRGGREGYASYYPD
YYNGHYQYRDSAQWERYDPAAYDPRYRDYRDYDVPYWYYGAYQARDLYREAYTDRKWWNR
QQSQIYRSQQDLTSQAPAQAANTEYAYEYPQSAVHPGYSDYQYLYPAETGWQPVEKAPAP
LRPVTPEKFTVPHLCVRFSPGGQLLKVLPNLPSEGQPALVELHSLEVMLQHMPEQEELRR
FPGPLVKEETHKVDVISFAQNKATECLRNDELLDKESANLLWELIVLLCRQNGTVIGTDI
AELLLREHRSVWLPGKSPNEANLIDFNNDLVPRAEEESCTSLFTDSFLDSNSTENPGKDT
ERFRELLLFGRKKDALESAMKHGLWGHALLLASKMDSRTHAKVMTRFANSLPINDPLQTV
YQLMSGRMPAAATCCGDERWGDWRPHLAMVLSNLSHGLDLDRKTITTMGDTLATKGLLDA
SHFCYLMAQIGFGVYTRKTTKLVLIGSNHSWSFLRFASNRAIQRTEAYEYAQALGNQVCF
LPNFQVFKFIYACRLAEMGLAAQAFHYCEVIARTVLRNPAYYSPVFLSQLIQISSQLRFF
DPQLKERSEQELHVEPDWIKHLQQTESQLKDGAFVCRSGRATPQPFCSSTPSSEYDQVSQ
SDGLATGPQEEALXVDNPLMTSFVPDAGLPGMLGVQLMPPAPPHTVLDSRPMAAPPPQVM
MMDGSVPMYSPTQASPGFPGQSSQLCLKQPYDPAKGPLSTAPTSGPLQRLCRLCWSSSCQ
RTLVECNSINQQTSPKRHSFGESGQQDFYDHMAKMVMLPGFIFCRISSCDSCLTDLHSLF
PHHTPTGTKARYVDVLNPSGSRPGGVLLPPVDLFAPLAPMPIPTNLFVPLPGEVSQPPEG
SPAENSQSVEQTNPEATAHAQIFNPVPNADPLPSEPSNLQFGEAAPQTLHGGPASGAVQF
YNPAQFPQPSAGPAASRPGRFVQRKYPTLK
NT seq
6393 nt
NT seq
+upstream
nt +downstream
nt
atgcagagcccgacaatgcagccaccaccaccccgttcatcatcgggagtcagcagcacc
gcaggagctcccatgagcggaggggcccacaatgtcttccggcggaacgctccctatagg
cgacccaatactccccagtcaggggcccctgccacactgccaccagtcactgaccctttt
gggcttggccggactactcagactgatggttcaccatcgctgcaaaacgctgtgaacggt
ggaccccaattccccagccggcaagatggcagtcagctgctttggcccaattatgctttt
ggagacgcgcaggttatgtttccgggagtgccggctgctctgggagaacggtgtgagccc
tatggtgcaccggccccacttcccccggcaccgcggtttggtgaagctggttcgttctcc
cctgctgcccctcttcaaggagctgaagctggactgggattgcccccagagccctcgtat
tttcacacagggctgggctcggagaacagcgagatggggcaggcacgcctgcagaccagg
cctccccatgggcaagaggggggccaagatcctcaatcctttcctcctgcacccagcttc
ccgctgccgttccagccgggctcctctgcctcctcgcagtgggtggcgagtcacggcagc
cggcctccgtctgtccagaactactttcagcccagcgacccccagactcaaggttttggg
ggttactgcgcccttcagccagcgcctgtcccacctcaccaaaaccaggctgccagcagc
cactaccagcaacaccactcccaaccactagagtcccacacgcagtttcccggagccgag
cggcacgacgctggccgaccatctccattccaccaacctccccagctgcaacacagtttc
cccagccctggctttgcccggtcagaggactggtcacctggcccccctcgagaaccgtgc
cagcagcatcctgtgcctcttcctgggcaccagactgactgtcccattccacatttaggt
ccaccagttgcctctgacccaggaactgtctccatgtttttcaaagggggagaagtggag
aatgaagagactctggtgtctgagcagcagagtggggtctgtgccactcttggagatgcc
tttcaacccagtactgggccattcttcagcgcaccgcagctgcctgacctgtgtactggt
ggcgtggaaccccggggcgtaggtcctcgcccgcccgctccctgcggtgtttacagccaa
gggggtggggaccctgctggaacggcagattataccgtcccccagggtgggggtttggtg
atggaggatgaagaaaattctgaatttgtccagaaccaagaagtcctgcccagtgagtcc
gacagaattccagcaggtttccagcctgtgccagggctggtgaacccagggccgcattct
gccagaaacatgggtacaggaggaggaccaccacgaaatctcgagacccccgactctgcc
caccaccctctgcggtctgacagcatctcctccaatcacagcagcgccagtcacagcagt
ggctccagtttaaggagatcccaagcccagttgagcacattcatccagcaagaaagcggg
aagcctcccacagaaaccccgtcccgtttctttgagcagattgactcctctcctctgagc
cgggaccctttgcaccctggcaaggaggtggagagtgccggacggcccttgtactacagc
cagctgtcccagcctcctgccctcagctcccccaaaccaacggccaccttccaagccagt
gccaacagctcattcgaaccggtcaggtcgcatggccacctgacaatcaaagctgtcgaa
gtggaccaggcaaagatggtgatggagctgaaccaatcaacaatgagtgtcatggggcag
cggctcggagctgggccattggacatttccccaggtaacctggaacagccaccagacaac
ctggaaaacgtccatgtcccccggccccactcaagcctctaccctggcacagggacaccc
gaaagcatggcacggcctgcatcagaggagccccacaaacgaccctcctcgagggtggct
ggtgtctgggtgaagtcggagagtccagctgccaccctatgggcacagagtgagctgccg
aacttctgtgctggcatcatgctggccccagctgctccagccgtgcctgcagcagccaaa
gatcctgcagtggaggtggtccaaccacctgaaggtggtggcaaggatttgaactactct
gctcctctcggaaacatggaaaaccctccccagggtacagaggacagagtgccaaaaatc
caggcaaattccagctatgccacgctcctggtcccaactccagcctcgcccaccccaccc
gtgctactcgctcgtccccttcagacctccccccatctacccagtcctgagcggcctctc
cgagatcaaggcgatggtcaaagtgtcgcctttccgactccggtcctgctgaaccctgac
cttgtcaccacaacacagggatcggtgcacgatcaggctccacttaacctggccacagac
ggtcgcctcaacccaaggcaggttgctgaagcatcgacagcgaatcctgctgcccccact
agccccccgtcaagccgagctcctcctgcagctgtaaccaccccagcttccaaccttcat
ccgcctgccgctggcagcaaggatgaaacaaagaatcaagtgtttgaccaacccagctca
tcgaccaactgtgagctgcttgatttcactctgcaccgcgctcctccacctaaccaagcc
gtcgctggcactaatccagcagcttccctgccactcggggctgccacgcagaaccctgct
ccctgccacacttatactgcagggctctacaccaacgacaaaccaggtttctacctgcag
gtcaccacagacgtccaacagcagcagcagccgattgctgcagtgactggacagcaggca
gcgccacctccaccaccagctcacgatcagtccaagcacctaatggggtctgtgccggtc
agtgggcagtacccaccggcaggttatggatatccagggtctggtcccccccagcctccg
gtgcagcagcaattggcggctgaagctccagtaacagcaacgggtgttcttcagcccccc
actatccatgaggtgatgccacagcaaccgtaccctccagcacagccacacccagcttat
gggtacacttacccgtacatgtgccaggattatggtgcagaccctcaacagccttatgcc
gtgccttacccatcgtacccatccctggacccgagagttggccaacaaatatcttaccca
ttgatggactccagaggcaaccacccgtactaccaggatgacccctaccgccgttatggt
cgatatggcaggtatgacgccaataatgtgagttacagggaacctgagagagagaagacc
agtcgacccagctcgcgagcgagtcagtcctcaaacagaccgtcttccaggcaagggtgt
gctgaagacccgtataatggaagaggagggcgagagggctatgctagttactatccggat
tattacaatggccattatcagtacagagattcagctcaatgggaaaggtacgacccagct
gcctatgatcctcggtacagggactacagggattacgacgtgccgtactggtattacgga
gcataccaagcacgggatctttaccgggaggcctacacagacagaaagtggtggaacagg
cagcagagccagatttacaggagtcagcaagacttgacttctcaagcaccagctcaggca
gccaacaccgagtacgcttacgaataccctcagagcgccgtacatccaggctactcggat
tatcagtacctatatccggcagaaacaggctggcagcctgtggagaaagctccagctcca
ttaagaccggtgacccccgagaaattcacagttcctcatctctgtgtccggttcagcccc
ggagggcaattgctgaaagtgttgcccaacctcccttcagaaggacagcctgccctggtg
gagttgcacagcctggaggtgatgctgcagcatatgcctgagcaagaggagctgaggagg
ttcccagggccgctggtgaaggaagagactcataaagttgatgttatcagctttgctcaa
aacaaggccacagaatgcctgaggaatgacgaacttctggataaggagtctgccaacctg
ctgtgggagctgattgtactgttgtgcaggcagaatgggacagtgattggtacagatatt
gctgagctccttctgcgggagcaccggtccgtctggcttcctgggaaatcgcccaatgaa
gcaaatctaattgacttcaacaacgatttggttccacgtgcggaagaagagtcttgtacc
tccctcttcacggatagtttcctcgacagtaattccacggaaaatcctggcaaggacacg
gaacgtttccgcgagctgctgctatttggccgtaagaaggatgccctggagtcggccatg
aagcatgggctatggggtcatgcattgttgttggccagcaaaatggacagccggacgcat
gcaaaggtcatgaccaggtttgccaacagtctgcctatcaatgaccctctacagacggtg
taccaactgatgtctggtcgcatgccagccgcggccacgtgttgtggagatgagaggtgg
ggcgactggcgaccccaccttgcaatggtgctgtctaacctttcccatgggctcgacctg
gacaggaaaaccatcaccacaatgggagacacgcttgctaccaaggggctgctggacgcc
tcgcacttctgttacctgatggcacagattggatttggagtgtacaccagaaagaccacc
aaactcgttttgattggctcaaaccacagctggtcctttctgaggtttgcttcgaacaga
gccatccaacgcacagaggcatacgagtacgcacaagctctgggtaaccaagtctgcttc
cttcccaactttcaggtatttaagtttatttacgcgtgcagactggctgagatgggtttg
gctgcacaggcctttcactactgtgaggtcatcgcgaggactgtcctcaggaacccagcc
tattactcaccggtgttcctgagccaactcattcagatttcctcccagttgcgattcttt
gaccctcagttgaaggaacgatcggaacaggagttgcacgtggaacccgattggattaaa
cacctccaacagacggaaagccagctgaaggacggagcgtttgtttgcaggtcaggcaga
gccacgccccagccgttctgctccagcacccccagttcggagtacgatcaggtcagccaa
tcagatgggcttgcgacaggccctcaggaggaggccttgngagtggacaatccattgatg
acatcctttgtgccagacgcaggattgccgggaatgctcggagtgcagctcatgccacca
gctcctcctcacaccgtattggacagcaggccaatggcagcccctccgcctcaggtgatg
atgatggatggcagcgttcccatgtactcgcctacccaagcctcgcccggcttcccaggg
cagtcctcccaactctgccttaaacagccttatgatccagctaaaggcccgctgtccacg
gcacctacttcgggccccctgcagaggctctgcagactgtgttggagcagcagctgccag
agaactttggttgaatgcaattccatcaaccaacagacgtcaccgaaaagacacagcttt
ggggaaagtggacagcaggatttctatgatcacatggccaaaatggtaatgttgcctgga
ttcatcttctgcagaatatcttcatgtgattcctgtttaactgatttgcattctctcttc
ccacaccacaccccaacaggtacaaaggctcgatatgtggatgtcctgaatcccagtggg
tcgaggcctggtggggtactgctgccccccgtggacctgttcgcccccctggcaccaatg
cccattcccaccaacctttttgtaccactgccaggtgaagtatctcagccccctgaagga
agcccagcagagaattctcaatctgtggaacagacaaaccccgaggcaaccgcacatgcc
cagatttttaacccggtaccaaatgctgatccattgccttctgagcccagcaatttacag
tttggagaggctgcccctcagactctgcatggtggccctgcatcaggagccgttcagttt
tacaaccccgcccagttcccccaaccttcagccggacctgcagcctctcgaccgggacgc
ttcgtacaaaggaagtatccaacattgaagtga
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