Scyliorhinus canicula (smaller spotted catshark): 119955596
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Entry
119955596 CDS
T11175
Symbol
tnc
Name
(RefSeq) tenascin isoform X1
KO
K06252
tenascin
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04510
Focal adhesion
scau04512
ECM-receptor interaction
scau04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119955596 (tnc)
04518 Integrin signaling
119955596 (tnc)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119955596 (tnc)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
scau00536
]
119955596 (tnc)
Glycosaminoglycan binding proteins [BR:
scau00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119955596 (tnc)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
EGF_TEN
EGF_Teneurin
Fibrinogen_C
EGF_Tenascin
EGF_2
Fn3_Dep-1_3rd
FN3_DSCAM-DSCAML_C
Fn3_Dep-1_2nd
Fn3_VIN3
Pur_ac_phosph_N
EGF
DUF7949
hEGF
REJ
EGF_integrin
Motif
Other DBs
NCBI-GeneID:
119955596
NCBI-ProteinID:
XP_038637877
LinkDB
All DBs
Position
21:34578184..34928611
Genome browser
AA seq
2596 aa
AA seq
DB search
MGLKWHILVCFVTAILVEQTHEGLIKKVIRQRRDIVQPKEENITLPVGIQPINFNHVYNI
NVPLGSLCSVDLESPDGIARPKADSSDQHIEHTVDGENQIVFTHRINIPRQACGCAAGPD
IRDLLNRLEVLEGHVSSLRDQCANGGCCGNGAQQGTGRIDVKPFCGVNGNYSTDTCGCLC
NPGWKGTNCTEPDCPEQCNERGTCVNGKCLCEEGFTGEDCGIEVSCPNDCSDQGRCINGV
CHCFSGYTGEDCSQQLCRFDCGEYGICIDGICVCDEGHTGEDCRIKLCPNNCSGQGICIN
GQCVCDEGLTGEDCRDLACLNNCYNRGRCVDGECICDEGFTDQDCSEIICPHDCYDRGRC
IDGVCYCDEGFTGEDCGELVCVNNCSNNGLCVNGQCVCNEGYAGEDCSEWACLNNCNHRG
ICVDGECICNEGFAGEDCGESTCPNNCNHRGHCDEGHCICDEGFTGEDCSQLLCPNNCNN
FGRCVKGRCICNYGFTGDDCGEVACPNNCNNRGHCVSGQCICEEGYSGEDCSELICPNDC
YDRGQCVNGQCICEEGFTGEDCGQLACPNDCNNRGRCVNGQCICDDGFTGEDCSALACPN
NCNNRGQCVNGQCVCDPNYRGLDCAGLACPNNCNDRGSCVDGRCVCDEGYINEDCSAVSP
PKNLKVTEVNPKTVDLEWENEVRVNEYLITYSPTTPGGLQLEIRVPGDRMSSTIHGLEPG
VEYLINVYAILNNQRSVPVSARVATNLPTPDGLRFKSIRETTVSVEWEPLEIVFDGWEII
FKAPKEENGEISNSLKQPQVSFVQTGLAPGEEYEVSLHILKNNTRGPPTKQRLTTMIDAP
SQLEINEVTDTTAHITWFKPSARIEGISLSYGIPGSEKVTVELPDTETAYSIAELQPDTE
YEVSLVSKRGNMRSVPAVNTFTTDLDAPTNLRNELPTADTITLEWTNTKAAADSYKVKYS
PLAGGEHKEITVQRSTQPTTKIKISDLQPGTEYGFGVSAIKGNRESAPATINIATDLDSP
RDLKVVETTESTITLAWKRPLAVIDHYYIIYISPIGERNEEIVAADAVSYILTRLNPAAE
YTITLIAQRGKQRSRASTTSASTGLEALRGLKFSEVTPTSTSVAWEAPLAPVDMFVVNYN
PKTHGETQQVIVKGDQTTVALTDLKPATEYVVTLMALRGTARTEPLVGSVTTAMLEPAFT
DTVEEASTPLPSGRITVPVVSLQLEASVPEFSGTGDGEISNLTVSDVTADAVRLSWMAEI
GSYDHFVIKYRSGLGAEDETEISVAGDDLAAEIRGLMPSTPYEITLYGIAGGQRSEPLNI
IATTAALLNNPAGELIDHTTSLTARLHKDGGFNHGPSFHSEKGVIHSKLGSITVVNSTSK
SIKLSWTVQNGSFDSFLIVVTDSTGLYGPLEMSLNGDSHNTEITGLLDSTHYKVYLYGFV
GQWRSDPLNAEATTESFDNSTTHSPSSEAAKPENLVVKNVTTTSFGLSWTAQKGVFDSFL
LTVKDVNGLNVPLKISQPGDQHTSDVTGLVAGTNYEIELYGIIQGRLSQPLRDIAKTESD
LENLLVSEVTSGSFRLSWTTDEPFESFVIDIKDSDGLFEQLTYTVPGDQYSIDIPHLRAA
TAYEVSVYGIIHGQQTRPLYTEAQTVTEPTLSNLMISNVTSDGFTVSWTANGIFQSFVVD
ITDPNRIFETSEHIVSGNLRFIGISKLLANTDYVIYLSGLYQGEHMQMLSAVATTEAVPE
VGNLVVSDITSDSFSLSWTGKDEAFESFVIELVDSDRFTEPQEYTVLGNRQATQLSNLIA
GTNYVIYFYGIVNGRRTNPASTVVLTEEEAELGNLVVSDITSEGFTLSWTAEDEAFDYFV
IDVRDFDSSLDPIQQALSGKTRTSDISGLVEGTGYQINVTGVIQGWRSQPLTAVAATEEK
PKMENLMVSHINSYGFKISWNATDGAYESFVIMVRDSGRLLEPMEHKVSGDRHSIDIKGL
ITGIGYDINVYGVASDQRSKPLYAKTATEAEPEVDNLAVSNVTSDGFTLSWTTDENDFDY
FKIRIRDSGKESAPLDYTVSGDLRTTGITGLSDGTQYDISLVGIAEGRHSQPINTIAATG
LGAPKGIQFTDITDTTLTVRWDLHRTYITSFKIIYVPTDGGASNTETVDGSKTRITLRKL
TPATKYEIKVIAVKDFEESEPISGTVDTALDSPSELGVTKVTDSEALLVWKPTIASIDEY
IITYSAEDDSPITKRVSGDLTQFELDALLPGTLYTVWIHAVKGSLESSASSTTFMTAIDP
PRDLRVGEIKTSDALISWKPPRAQIDGYILTVESEDGKGQKVEYFGAADISYNMGQLAPS
MKYNVRLQAYRGSERSNVIETIFTTAGSLYPFPKDCSQTLLNGEANSGIHTIFVNGNRSQ
PLRVYCDMTTDGGGWMVFQRRENGKVDFFRNWKNYSNGFGNPADEFWLGLENLHKITSQG
HYQLRVDFRDEGDSAYAVYDRFLVTDSKSRYKLHIGGYNGTAGDSLTYHNGRPFSTKDRD
NDLAVTNCALSYKGAWWYKNCHRVNLNGRYGSRSHSQGVNWYHWKGHEHSIEFVEMKLRP
HNVRNAQIKKRAQQQH
NT seq
7791 nt
NT seq
+upstream
nt +downstream
nt
atggggctcaagtggcacattttagtttgttttgtgacagctattttggtggaacaaacc
cacgaggggcttattaagaaagttattagacagaggagagacattgtacagccaaaagaa
gagaatatcactttacctgttggaatccaacctataaacttcaaccacgtctacaacatc
aatgttcctcttggctctctctgttcagtggacctggagtctcccgatggcattgcaaga
cccaaagctgattccagcgaccagcacatagagcatactgttgatggtgaaaatcaaatt
gtcttcactcatcgaatcaatatcccacgtcaggcctgcggctgtgcggcagggccagac
atccgtgacttactcaacaggttggaggtgctggaaggtcatgtctcatcattgcgtgat
cagtgcgctaatggaggatgctgtggaaatggtgcacagcaaggaacaggtcgcattgat
gtaaaaccattctgtggtgtaaatggaaactacagtacagacacttgtggctgtttgtgt
aacccaggctggaaaggaacaaattgcacagagcctgactgtccagaacagtgcaatgaa
agaggcacctgcgttaacggcaagtgtttgtgtgaggaaggtttcactggtgaagactgt
ggcattgaagtctcctgccctaatgactgcagtgatcaaggcaggtgtataaatggtgtc
tgtcattgctttagtggttacacaggagaagactgtagccagcagctgtgtcgatttgac
tgtggtgaatatggaatctgtattgatggaatttgtgtctgtgatgagggtcatacaggc
gaagattgcaggataaagctctgtcccaacaactgcagtggccaaggcatttgtatcaat
ggacagtgtgtctgtgatgaaggcttaactggagaagactgtagggatttggcctgtcta
aacaactgctataatcgtggccgctgcgtggacggagaatgtatctgtgatgaaggtttt
acggatcaggactgctcagaaattatttgccctcatgactgttatgatcgtgggcgttgt
attgacggggtatgttactgtgatgaaggtttcactggtgaagattgtggagaacttgtc
tgtgtaaacaactgcagtaacaatggcctctgtgtcaatgggcagtgtgtctgcaacgaa
ggctacgctggcgaagactgtagcgaatgggcttgcctgaacaactgcaaccaccgtggg
atctgtgtcgatggagagtgcatctgcaatgaaggcttcgctggagaagattgtggtgaa
tcgacctgcccaaacaactgtaaccatcgtggacactgcgatgaaggacattgtatctgt
gatgaaggcttcacaggagaagactgcagtcagctcctctgcccaaacaattgcaacaat
tttggtcgctgtgtcaaaggccggtgcatctgcaactatggcttcactggagacgactgt
ggtgaagtcgcttgtccaaacaactgcaacaaccgaggtcactgtgtcagtggtcagtgc
atctgtgaggagggctattcaggagaagactgcagtgagctaatttgcccaaatgactgc
tatgaccgtgggcaatgtgtcaatggccaatgcatatgtgaagaaggtttcacaggggaa
gactgtggtcagctggcctgtccaaatgactgtaacaaccgtggccgctgtgtcaacggg
caatgtatctgtgatgatgggtttactggcgaggactgcagtgcactggcctgccctaac
aactgcaataaccgtggccaatgtgtcaatggtcagtgtgtctgcgatccaaattacaga
ggactagattgtgcaggtttggcctgtcccaataactgcaatgatcgtgggagttgcgtt
gatggtcgatgtgtctgtgatgaaggctacataaacgaagactgctctgcagtttcaccc
cctaagaacctaaaggtgactgaagtgaatcctaaaactgtggacctcgagtgggaaaat
gaagtccgggtaaatgaatacctcatcacctattccccaaccactcctggtggtctacag
ttggaaatacgtgtacctggagatcgaatgtcatctaccatccatggactagagccaggg
gttgaatatttaatcaacgtttatgctatccttaacaaccagagaagcgtccctgtcagt
gccagggtagcaacaaatctacccacaccagatggtttaagattcaagtctatccgtgag
accactgttagtgtggagtgggaacctttggaaattgtgtttgacggctgggagatcatt
ttcaaagcccctaaagaggaaaacggggagatttccaacagcttgaagcagccacaagtc
tcatttgtacagactggactggctccgggagaggagtatgaagtcagccttcacattttg
aaaaataatactcgtggcccaccaactaaacaaagactgacaacaatgattgatgcgcca
agccaactggaaataaatgaagtcacagacaccactgctcacattacctggttcaaacca
tctgcccgaattgaggggatcagcctatcctatgggattccaggaagcgagaaagtaact
gtcgaacttcctgacacggagacagcctattccatagccgagcttcaaccagacactgaa
tatgaagtttctctggtttctaaacgtggcaacatgagaagtgttcctgctgtcaatact
ttcacaacagaccttgatgcccctacaaacctcaggaacgagttgccaactgctgacacc
atcaccttggagtggacaaacaccaaagctgctgctgatagttacaaggttaaatattca
ccactggcaggaggagagcacaaagaaatcactgtccaaagaagcactcaaccaaccacc
aaaattaagatttctgatctgcagcctggtaccgaatatggttttggagtcagcgccatt
aaaggcaaccgagagagcgctcctgctactattaacatagccacagacttagacagtcca
agagacttgaaagtggtcgagacaacagagagcaccatcactttggcatggaaacgccct
ctggcagtaatagatcattactacatcatctatatctcaccaattggtgagaggaatgag
gagatagtggccgctgatgctgtctcatacatcctgaccaggctcaaccctgcggctgag
tacaccattactctcatagcacagcgaggtaaacagaggagcagagcctccaccaccagt
gcttctacaggccttgaagcgctgcgaggtcttaagttctctgaggtaactcccacaagt
acctcagttgcttgggaagctcctttagctcccgttgacatgtttgttgtgaattataat
cctaaaacccatggagaaacgcagcaggttattgtgaagggagaccagactacagtcgct
ctcactgatctgaagcctgctactgagtatgtggtgacgcttatggctcttcgaggtaca
gcaagaacagagcccctggtcggatctgtcactacagcgatgttggagccagcattcact
gatactgtggaggaggccagtacgcctcttccctctggaagaataacagtgccagttgtt
tccttgcaattagaagcttctgtgcctgagttttccgggactggtgacggtgagatcagt
aacctaaccgtttccgatgtaaccgcggatgctgtgagactttcctggatggcagaaata
ggatcctatgaccattttgtcataaagtatagaagtgggcttggagccgaggatgagaca
gaaatctccgtggctggtgatgatttagctgctgaaataagaggcctaatgccctccact
ccttatgagataactctgtatggaattgctggtggtcaacgctcagagccgctgaacatt
atagctaccacagctgccttattaaacaaccccgctggtgagctgatagatcatacaaca
tccctcactgctcgactgcacaaggacggaggttttaaccatgggccctcatttcattca
gagaaaggggtgattcatagtaaactaggaagcatcactgtggtaaactctacttccaaa
agtattaagctctcttggacggtgcaaaatggatcttttgacagctttctcatagtggtc
acagattccactgggctatatggaccactggaaatgtccctaaatggtgactctcataac
acggagataactggcctcctggatagtacacattataaggtatatttatatggatttgtg
ggacagtggcgttcagatccattgaatgcagaagccacaacagaatcctttgacaattcc
actacacattctccaagctcagaagccgccaagccagagaatcttgtggtaaaaaatgta
actaccaccagcttcggactatcatggacagcacaaaagggagtctttgatagttttctt
ttaacagtaaaggatgttaatggattgaatgtccctttgaagatttcccaaccaggtgat
cagcacacgtctgatgtaacagggctggttgcgggcactaattacgagattgaactttat
ggaataattcaaggccggctctctcaaccactgagagatattgcaaaaacagaatctgat
cttgaaaacttattggtctcggaagttacctccggcagcttcagactctcttggacaact
gatgagccctttgaaagctttgttatagatattaaagactctgatgggttgttcgaacag
ttaacatacacagtgccaggtgatcagtattccattgacatcccacatctacgtgctgct
actgcctatgaggtttctgtctatggtataattcatggtcagcaaacaaggccgctttac
actgaagctcaaacagtgactgaacccacacttagcaacctaatgatttccaatgtgacc
tcagatggtttcactgtctcttggacagcaaatggcatcttccaaagctttgtggtagac
attacagatcctaacaggatcttcgaaacctcggagcacattgtctcaggcaaccttcgc
tttattggcatctcaaagctcttagccaacactgattatgtcatttatctctctggcctt
tatcaaggagagcacatgcaaatgcttagcgcagttgctacaacagaagcagtacctgaa
gtgggcaacctagtggtatcagacattacctcagacagcttcagcctctcttggacggga
aaggacgaggcatttgaaagctttgttatagaacttgtagattctgacaggttcacagag
ccacaggagtacacggtactgggcaacaggcaagccacccaactctccaacctcatagct
ggcactaattatgtgatttatttctatggtattgtcaatggccgacgcacaaaccctgca
tctactgttgtactgacagaagaagaagctgaacttggtaacctagttgtttcagatatt
acctcagaaggcttcacgctctcttggacagcagaagatgaggcatttgattattttgtc
atagacgttagagattttgacagctcgcttgatccaatacaacaggctctgtcaggcaaa
acacgaacttctgacatctcaggtctagtcgaaggcactggataccaaattaatgttact
ggcgtaattcaaggctggcgctcgcaacctcttactgctgtcgctgctacagaggaaaag
cccaaaatggaaaacctaatggtttcacacataaattcttacggattcaaaatctcatgg
aacgcaacggatggggcctatgaaagttttgttataatggttagagattctggcaggttg
ttggagccaatggaacacaaagtgtcaggagatcgtcactccattgacatcaaaggcctg
attactgggattggttatgacattaatgtctatggtgtagccagtgaccagcgttctaag
cccctatatgctaagacggcaacagaggccgaacctgaagtggacaacctagccgtttct
aatgttacctcagatggcttcacactttcgtggacaacagacgagaatgactttgattac
tttaaaattagaattagggattccgggaaggaatctgctcctctggattatacagtgtca
ggtgatttacgaacgactggcatcacgggcctgtctgatggtactcaatatgatatttcc
ttggttggcattgcagagggacgacattcgcagccaataaataccatagcagccacagga
ttaggagctcctaagggtattcagtttacagatatcaccgataccacactgacagtcagg
tgggaccttcacagaacctacatcaccagtttcaagatcatttatgtgccaactgatgga
ggtgcaagtaatactgagacagttgatggcagcaagactcgaattacactgcggaagctg
acccccgccactaaatatgaaatcaaagtcatcgctgttaaagactttgaggaaagtgaa
ccaatttcaggcacagtagatacagccttggacagtccgtcagaattaggagttacaaag
gtcaccgattctgaagccctgttggtatggaagcccactatcgcttcaatagatgaatat
atcatcacctacagtgctgaggatgattctccaataacaaagcgagtttcaggagacctg
acacagtttgaacttgacgctcttttacccggcaccctatacactgtctggatccacgct
gtgaaaggctctctcgaaagttctgcctcatccactacctttatgactgccattgatcca
cccagagacttaagagtcggagaaattaaaacaagtgacgcactcatttcatggaaacct
ccacgagctcagatcgatgggtacattctgacagttgaatctgaagatggaaaaggacag
aaagttgaatactttggagcggcagatatctcatacaacatgggtcaactggctccatca
atgaaatacaatgtgagacttcaggcatacagaggctcagaaagaagcaatgtaatcgag
accatcttcacaacagctggctccttgtatccattccccaaagattgctctcaaacattg
ttgaatggtgaagccaattccggcatccataccattttcgtgaatggaaatcgttctcag
ccactccgggtgtactgcgacatgaccactgatggaggtggttggatggtcttccagagg
cgtgagaatggcaaggtggatttcttcagaaactggaagaattattccaatggatttggc
aaccctgccgatgagttttggttagggcttgaaaaccttcacaagattacatcacagggc
cactaccaattgcgtgtggatttccgagatgaaggagactctgcttatgcggtttatgac
cggttccttgtcactgactccaaaagtcgatacaaactgcacattggagggtacaacgga
actgcaggtgattctctgacttatcacaatggccgtccattctccacaaaggacagagac
aatgatttggccgtgacaaactgtgctttgtcttacaagggagcatggtggtacaagaac
tgccacagagtaaatctgaatgggagatatggaagtcgaagccatagccagggtgttaac
tggtatcactggaagggccacgaacattcgattgaatttgttgaaatgaaattgagacca
cacaacgtcagaaatgcacagataaagaagagagcacaacaacagcattaa
DBGET
integrated database retrieval system
