Scyliorhinus canicula (smaller spotted catshark): 119955684
Help
Entry
119955684 CDS
T11175
Symbol
gapvd1
Name
(RefSeq) GTPase-activating protein and VPS9 domain-containing protein 1 isoform X1
KO
K27566
GTPase-activating protein and VPS9 domain-containing protein 1
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
scau04131
]
119955684 (gapvd1)
Membrane trafficking [BR:
scau04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
119955684 (gapvd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RasGAP
VPS9
DUF5601
DUF5740
EF-hand_14
Motif
Other DBs
NCBI-GeneID:
119955684
NCBI-ProteinID:
XP_038638052
LinkDB
All DBs
Position
21:48063545..48202481
Genome browser
AA seq
1545 aa
AA seq
DB search
MEGGSWRGRECWSRERGATGAVAVFVSRPSGQARRYTVLCHLKMVKPDLHTLAHHLKQER
LYVNSEKQLLQRLNADVLKTAEKLYCSAWIAKQQRINLDRLILTSVEASPAECCKHAKIL
ESTQFVDGYKQLGFQETLYGEFLNRLRENPRLVASCLVAGEKLNHESTHNVILTVFTALY
GNCIMQEDESYLLQVLRYLIEFELKESDNPRRLLRKGACTFSILFKLFSEGLYSAKLFLT
ATLHEPIMLLLVEDEDHLETDPNKLIERFTPAQQEKLFGEKGTEQFRRKVQEMVESNEAK
LVALVNKFIGYLKQNTYCFPHSLRWIVSQMYKTLSCMEGLAVGEVKAMCTDLLLAYFICP
AIVNPEQYGIISDAPINEVARFNLMQVGQLLQQLAMTGSEEADPRLKNSLSKFDKSCVAA
FLDVIIGGRTVETPPMSSVNLLEGLSRTVVYMTLNQLVSLITFARHVRSGELMREEDKMA
LENLIINVPQTRTGKSNSLELTPSSTPQLSPASTPANKKNRLQIGQQLAAITAWDTSATN
LTAHIPLVTPFAGRNRNRTNEAKDQHFEHESSSQEPVQEVQPEEVLVISLGITSQMSPGM
MSENEVLSMQLAESGQGEVPVEDGKLHGKPDKTLRFSLCSDNLEGISEGPSNRSNSVSSL
DLEGESVSELGAGPSGNNGVEALQLLEHEQATTQDNLDDKLRKFEIRDMMGLTDDRDISE
TVSETWSTDVLGSDFDPNIDEDRLQDIAGAAAESMLGSLLGLPGSTSVLLDPCTGSTISE
TTSEAWSVEVLPSDSEATDLKQEERLQELESCSGLGSTSDDTDVREVSSRPSTPGLSVVS
GFLHYLTGISVTSEDIPNKVEDIRSECSSDFGGKDSVTSPDVEEIVQGAHQMTSSLPHTD
ALLAMFDPLSSDASIIPSIVRPKVHYARPSHPPPDPPILEGAIGGTDARLPAFGSHTCCQ
TEAELLKQRHSFPERLVRSRSSDIVSSSRRPMSDPGWNAPGSRRMANEELYAAGAAPVGA
SGPTSSPSKDSLGEDRKDSDDEKSDRSKSWWKKRFVSAIPKAPISFRKKDKQEKDKEDGA
QERFQAMQGWLILPYITNEEAIPKLNAQTQAAEDILDKYRSAIKRASPNEAVANDEVTEA
IGDDSMHDSPRDETLQNLSADDLPDSASQTAQNQDATFSFRDAKKKLRMALCSADSIAFP
LVSHSATRNGPPGGPDQGELEDNEIVCFLKVQLAEAINLQDKHLMAQIQETMRCVGRFDS
RTCHKLLAAIAEDYRKRAPYIAYLTRCRQGLQTTQAHLERLLQRVLRDKEVANRYFTTVC
VRLLLESREKHILEFIKDFQNLTAADDKTALVEEFLQSLYGAMAQDVIWQSASEEQLQDA
QMAIERSVMNRIFKLAFYPNQDGDILRDQLFYEHIQRLCKVVSANHRALQIPEVYLKEAP
WPSAQSEVRTINAYKTPRDKVQCILRMCSTIMNLLSLANEDSVPGADDFVPVLVFVLIKA
NPPCLLSTVQYINNFYASRLGGEESYWWMQFTAAVEFIKTIDDRK
NT seq
4638 nt
NT seq
+upstream
nt +downstream
nt
atggagggcgggagttggagggggcgcgagtgttggtccagagaaagaggcgccactgga
gctgtggctgtgtttgtgtcgcgcccgtccggccaggcccgtaggtatactgtcctgtgc
catttgaagatggtgaagcctgatcttcacactctggcccatcatctcaagcaagaacgt
ctttatgtgaactccgaaaagcaattgcttcagcggttaaatgcagatgtactaaaaact
gctgaaaagctatactgctcagcatggattgcaaaacaacagcgaattaacttggaccgt
cttatattaacaagtgtggaagcttctccggcagaatgttgcaaacatgccaagatcttg
gagagtacacaatttgtggatggatacaagcagctggggtttcaagagacactatatggt
gaatttctgaatcggcttcgagaaaacccaagacttgttgcctcatgtttggttgctggg
gaaaagcttaatcatgagagtacgcataatgtcatcctcacagtatttactgccctttat
ggtaactgcattatgcaggaagatgagagctatcttctgcaagtgttacgttacctaatt
gagtttgaactgaaagagagtgataaccctaggcgcctgcttcgaaaaggtgcttgtact
ttcagcattttgttcaaacttttttcagaggggttgtattctgcaaagctctttttgaca
gcaactttacatgaaccaattatgctgctgcttgtagaagatgaagatcacttggaaact
gaccctaacaagcttattgaaaggtttacaccggcacagcaagaaaaactttttggggaa
aagggcacagagcagttcagacggaaagtgcaggagatggtagagagcaatgaagcaaag
ctcgtagctctagtcaacaaatttattggatatctcaaacaaaatacatattgctttccg
catagtttacgttggattgtatcacaaatgtataaaaccttgtcttgtatggaaggattg
gctgttggagaagtgaaagccatgtgcacggatctgttacttgcttactttatttgccca
gcaattgtgaatccagaacagtatgggataatctctgatgctccaataaatgaagtagca
agatttaacttgatgcaggttggccaactcttgcagcagttggcaatgacgggcagcgaa
gaagcagatccgcgattgaagaatagtctttccaaatttgacaaaagttgtgttgcagct
ttcttggatgttatcattggaggccgtacagtggaaacccctcctatgtcctctgtgaac
ctgctggaaggacttagcaggactgtggtctacatgacccttaatcaacttgtaagcttg
atcacttttgcacggcatgtaaggtcaggggagctgatgagagaagaggacaagatggct
ttggagaaccttattattaatgttcctcaaaccagaacagggaagagcaatagccttgag
ttgactccctccagcacaccccagctgtctcctgcaagtaccccagccaacaaaaagaat
cgactgcaaataggacaacaattagcagccattaccgcctgggacacctccgctacaaat
ctgaccgctcatattccccttgtaactccgtttgctggaaggaaccgaaaccgaacaaat
gaagcaaaagatcaacattttgaacatgaaagttcaagtcaggagcccgtacaggaggtc
cagcctgaagaagtattggtcatttcactgggtattacatcacagatgtcaccaggcatg
atgtcagaaaatgaggtgttgagcatgcagcttgctgagagtgggcagggagaagtgccc
gtagaggatggaaaactgcatggcaaaccagataaaactctacgtttttccctctgcagc
gataatctggagggaatatcagaaggaccttcaaaccgctcaaactctgtttcctcactg
gatctggaaggggagtcggtctctgaactaggagcaggaccttctgggaataatggtgtt
gaagctttacagctgttagaacatgaacaagccacaacgcaagacaatctcgatgacaaa
ctacgtaaatttgaaattcgagacatgatgggactgacggatgacagggacatttcagaa
actgtgagtgagacctggagcactgatgtcttaggaagtgattttgatccaaacattgat
gaagaccgactacaagatattgcaggtgctgcagcagagagcatgctgggtagtttgctt
ggtttaccaggttcaacttcagtattacttgatccctgcacaggatcaacgatctccgag
acaacgagtgaggcctggagtgtggaggttctgccaagtgactcggaagccacagatttg
aaacaggaggagcgtttgcaggagctggaaagttgttcaggattgggtagtacatctgat
gatactgatgtgagggaagtgagctcaaggcccagtacacctggactcagtgttgtatca
ggctttttacactatttaacaggcatcagtgtaacttcagaagatatacccaacaaggtg
gaggatataaggtcagagtgcagctccgactttggagggaaggattctgttacaagtcct
gatgtggaggaaattgtacagggtgcacatcagatgacatcttcacttccccacacagac
gcgttacttgccatgtttgaccccctgtcttctgatgcttcaatcataccatcaatagtc
agacctaaggtacactatgcaagaccatcacacccgccacctgatcctccaatactggaa
ggtgctatcggaggcactgatgcccgattaccagcatttgggtctcatacgtgttgccaa
actgaagctgagctgctcaaacagagacactcctttccagaaagactcgtgcgcagcaga
agctctgatattgtttcttcttctcgccgaccaatgagtgatcctggctggaatgcacca
ggcagcaggcggatggcaaatgaggaactatatgcagctggggcagcgcctgtaggagcc
tctggaccaacttcatctccaagcaaagattccctaggagaggatagaaaggacagtgat
gatgaaaagtcagatcgtagcaaatcctggtggaagaaacgatttgtgtctgctattcct
aaagctcctatttccttcaggaagaaagataaacaagaaaaagacaaagaagatggtgca
caggaaaggtttcaggccatgcaaggttggctgatcctaccttacataacgaatgaagag
gcaattcccaagttgaatgcacagactcaggccgccgaggatatcctggataaatataga
agtgctattaaacgagccagccccaatgaagcagttgccaatgatgaggttacagaggct
attggagatgacagcatgcatgattcgccacgtgatgaaactcttcaaaacctttcagcc
gatgatctgccagattctgccagccagactgcacagaatcaagatgccacattctccttt
agagatgcaaagaagaaattgcgaatggctctgtgctctgctgattcaattgcattcccc
ctcgtgagccattcagcaacaagaaatggccctcctggaggacctgatcaaggagaatta
gaagacaatgagattgtctgctttctcaaagttcagctggctgaagccatcaacttgcag
gataagcacctgatggcacaaattcaggaaaccatgcgctgtgttggcagatttgacagt
agaacctgccacaagttactagctgccattgctgaggattacagaaaacgggctccatat
attgcttatttgacacgatgccgtcagggacttcagactactcaggcacaccttgaaaga
ctcttacaaagagtgttgagagacaaagaggttgccaacagatacttcacgacagtctgt
gtaagactattgcttgaaagcagggaaaagcatattctggaatttattaaagattttcag
aatctcactgcagcagatgacaaaactgccttagtggaagaattcctgcagtcattatac
ggagcgatggcacaagatgttatctggcagagtgccagtgaagaacagctccaggatgcg
cagatggcaatcgagcgcagtgttatgaaccgcattttcaaacttgccttctaccccaat
caggatggtgacattttacgtgaccagcttttctatgagcacattcagcgtctatgtaaa
gttgtcagtgcaaatcaccgggcacttcaaattccagaggtgtatttgaaagaagctcca
tggccatctgcacagtcggaggttcgaacgatcaatgcgtacaagaccccgagagataag
gttcagtgtatcctgcgaatgtgctccaccataatgaatctgttaagcctggccaatgag
gactcagtccctggggcagatgactttgttcctgttcttgtgtttgtccttatcaaggct
aacccaccctgcctgctgtccactgttcagtacataaataatttctatgccagccggctc
ggtggagaagaatcctattggtggatgcagttcacagctgcagttgaattcattaaaacc
attgatgatcgcaagtga
DBGET
integrated database retrieval system
