Scyliorhinus canicula (smaller spotted catshark): 119955712
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Entry
119955712 CDS
T11175
Symbol
exosc2
Name
(RefSeq) exosome complex component RRP4 isoform X1
KO
K03679
exosome complex component RRP4
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119955712 (exosc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scau03019
]
119955712 (exosc2)
Messenger RNA biogenesis [BR:
scau03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
119955712 (exosc2)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
119955712 (exosc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
ECR1_N_2
EXOSC1
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
119955712
NCBI-ProteinID:
XP_038638121
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All DBs
Position
21:complement(66098660..66109998)
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AA seq
291 aa
AA seq
DB search
MAVDIRLATARKRVPLPADVGKHLVSPGDTITTDTGFMRGHGTYMEDEKLIASVAGAVER
VNKLICVKPLQTRYNGEVGDVVVGRITEVQQKRWKVETNSRLDSVLLLSSVNLPGGELRR
RSAEDELMMRDYLQEGDLISAEVQAVFADGALSLHTRSLKYGKLGQGTVVQVSPSLVKRR
KTHFHNLPCGAAIILGNNGYIWIYPIMEQKDDEAGGFVTNLEPVPLSDREVISRLRNCII
ALNVHKMLLYDTSVLYCYEASLHQQIKDILKPEIMEEIVMETRQRLIDQEG
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggcggtagacattcggttagcgacggcgcgaaagcgcgtccctttaccggcggacgtg
ggtaaacatttggtgtcaccgggagacacgatcaccaccgacaccggcttcatgagaggc
catggtacatacatggaagatgagaaactcattgcatcggtcgccggggctgtggaaaga
gtcaataaattgatatgtgtcaagccacttcaaacaagatacaatggagaagttggagat
gttgttgtgggcagaattacagaggtgcagcagaagcgatggaaagtggagaccaactcc
agacttgactctgtgctgcttctctcatctgttaatcttcctggaggggaactgagaaga
agatctgctgaggatgaactgatgatgagggactacctgcaagagggagacctgatcagt
gcagaggtacaggctgtgtttgcagatggtgctctgtccttgcacaccaggagtctgaag
tatggcaagctgggccaggggacagtggtccaggtctccccttcccttgtaaagcgtcga
aagactcactttcacaacctgccctgtggagctgccatcatccttggaaataacggttac
atctggatttatccaatcatggaacagaaggatgacgaggcgggaggatttgtgactaat
ttagagccagttcctttgtcagacagagaggtgatctcacgactccgcaactgtatcatt
gccctgaatgttcacaagatgctgttgtatgataccagtgttctgtattgctacgaggcc
tcactgcatcaacagattaaagacattctgaagcctgaaataatggaagaaatagtgatg
gagacaagacaacgtctaattgatcaggaaggataa
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