Scyliorhinus canicula (smaller spotted catshark): 119955722
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Entry
119955722 CDS
T11175
Symbol
rc3h2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
scau03000
]
119955722 (rc3h2)
04121 Ubiquitin system [BR:
scau04121
]
119955722 (rc3h2)
Transcription factors [BR:
scau03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
119955722 (rc3h2)
Ubiquitin system [BR:
scau04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
119955722 (rc3h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-CCCH
zf-RING_UBOX
zf-RING_2
Prok-RING_4
zf-C3HC4_3
zf-CCCH_4
zf-C3HC4
zf-C3HC4_4
zf_CCCH_4
zf-C3HC4_2
zf-CCCH_UNK
FYVE
Vesi_VP2
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
119955722
NCBI-ProteinID:
XP_038638150
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All DBs
Position
21:42745324..42887857
Genome browser
AA seq
1152 aa
AA seq
DB search
MPVQASQWTEFLSCPICYNEFDENVHKPISLGCGHTVCKTCLNKLHRKACPFDQTAINTD
IDVLPVNFALLQLVGAQVPDQQTVNLSNLTENKHYEVAKKCVEELALYLKPLSGGKGVAS
LNQSALSRPMQRKLVTLVNCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLAHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTTDPANLNRLRSHLELLANI
DPNPDAVSPTWEQLENAMVAVRTVVHGLVDFIQNFSKKGHEAPQPQPNSKYKTSMCRDLR
QQGGCPRGANCTFAHSQEELEKYRMRNKKINATVRPFPLPQALQNKVGITNIITTSGGNV
SVTGSTETTVKMVQTPNGIISPESSMPQLIPRCADTSAALENAKKIGQNCLSTSGSLSGS
PPENKIGSPPKTILNQVLSTPAVISSHIGPDATSLPSSKSGSRVSVYPSQQPDVYYQDPR
TPVAYELTAYHQPGGFHPPHPGLPSGVSPCLPRYVRPSSMPESPLPPTMPYTDHYNAYSP
RDRLASSPYPSAPPQQYGSVPAVHSGMYAPVYDSRRMWRPQMYPRDDVMRSNSLPPMDMV
PSSAYHPPPRERYSSLDGYYSMAGQPANEQRNVTMQRDAYSRMQQPGFDDLLRRKPDQWT
NYSSQKPPLVSSALPTVAQPSAPPSPLFSQDFSSEQFSENTSDLCVGTKFEDESISHYSP
WSCGTISTCISAMESDPKDIMATTSVEIMDLNVKRKLNLFDSQRRGKDEDPIIPFGDGPI
ISKWGAISRSARTGYHNTDPVQATASQGSATKPISVTVKYQCFPDYSPHVSHADSSSWSS
HALSYGSNSTTGQYLNRGRLRVIDLSGHRKHSNGGDQLHIELQQRQFSEVSADARSDRDI
ELELSALDTDADQDEGLEDVLDRHLGIVSQGDLPSDILSKNGHHHKHEDHEREEQGRRIA
EQIAITEEQKMIPVTSGFNQPTIASIGFVTCPAVTASFSINNLALKTSAVKLSEDQNDMK
PATNGEALVNGS
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaagcgtcgcagtggacagaattcctctcctgtcccatctgctacaatgaa
tttgatgagaacgtgcacaaacccatcagtttgggctgtgggcatactgtctgtaaaacc
tgcctgaacaaactacaccgcaaggcgtgtccctttgaccagaccgccatcaacacagac
atcgatgttcttcctgtgaattttgcacttctacagttagtcggtgcacaggtcccagac
cagcagactgtgaacctgagtaatttgactgaaaataaacattatgaggttgcaaagaag
tgtgtagaagagctggcactctacttgaaacctctaagtggaggcaagggtgttgcaagt
ttaaatcagagtgcactgagtcgaccaatgcagaggaaactggttaccttggttaactgt
cagttggtagaggaggaaggtcgtgttcgagcaatgcgggcagcaagatcactaggagaa
aggacagttactgagcttattctgcagcatcagaatccccagcagctgtcggccaatttg
tgggcagcagtcagggctcgaggttgtcagtttttgggaccagctatgcaagaagaagct
cttaaactggtcttgcttgcattggaagatgggtcagcactctctaggaaagtactggtc
ctctttgttgttcagaggcttgaaccacggtttcctcaggcatctaaaactagtattggt
catgtggtacaactcttgtaccgtgcttcatgtttcaaggttactaaaagggatgaagac
tcttctctgatgcaactgaaagaagagtttcgtacttatgaagctttgcgcagggagcat
gatgcacagattgttcatattgccatggaggctggacttcgaatttcacctgagcaatgg
tcttctcttctgtatggagacttggcacataaatcacatatgcagtcgatcattgataag
ctccaatccccagaatcttttgcaaagagtgtacaggaattgacgattgtcctacaacgg
acaacagacccagctaatctgaaccgactccgatcccatctcgaacttctggctaatatc
gatcctaacccagatgcagtatctccaacatgggaacaactagagaatgcaatggtagct
gtaaggactgtagttcacggccttgtggatttcatccagaacttcagtaaaaaaggtcat
gaagcaccacaaccacagccaaacagcaaatataaaaccagcatgtgccgagatcttcga
caacaaggaggttgccctcgtggagctaattgtacctttgctcactcccaagaagagttg
gaaaagtatcggatgaggaataagaagattaatgctactgtcaggccctttcctctgccc
caagctcttcagaacaaagttggaatcactaatataatcacaacttctggaggaaatgtc
tctgtgacaggatccactgaaaccactgtgaaaatggtgcagacgccaaatggaatcatt
agtccagaaagtagtatgccacaattaataccacgctgtgcagatacctcagctgcttta
gaaaacgctaagaaaattggacaaaactgtctcagtacatctggatcactatctggttca
ccaccagaaaataaaattggttcacctcccaagacaattctcaaccaagtgctctctacc
ccagctgtaatatcatcacatattgggccagatgcaacgtcattaccgtcttcaaaatct
gggtcaagagtgtcagtgtacccatcccagcaacctgatgtgtattatcaggaccccagg
acaccagttgcatatgaactaactgcttatcatcaaccaggagggtttcatcctccacat
cctggtctaccttctggtgtgtctccttgccttcctcgctacgtacggcccagcagcatg
ccggaatcaccgcttccacccactatgccatacactgaccactacaatgcatattcacct
cgggatcgtctagcatcttctccttacccatcagcacctccccaacagtatggttcagtc
ccagcagtgcattctggaatgtatgcaccagtctatgatagcaggcgcatgtggaggcca
caaatgtatccacgggatgatgtcatgcggagtaattctttacctccaatggatatggta
ccttcatctgcctaccatccaccaccaagggaaagatacagctcacttgatgggtattat
tctatggctgggcaaccagcaaatgaacaaagaaacgtcaccatgcagcgggatgcgtac
agccgaatgcagcaaccaggctttgatgacctgttgagacggaaaccagaccaatggaca
aactattcctctcagaaaccacccctagtctcttctgctttgcccacagtagcccagccc
tctgcacctccttcccctttgttcagtcaagacttcagctcagagcagttctctgagaat
accagtgatttgtgtgtaggcactaaatttgaggatgagagcatatcccactattctcca
tggtcctgtgggaccatcagcacttgcattagcgcaatggagtctgatccaaaagacatc
atggcaaccaccagtgtggagataatggaccttaatgtgaaacgaaagctaaatctgttc
gactctcagagaaggggaaaagatgaagatcccataattccatttggtgatggaccgatc
atctctaagtggggtgcaatttctaggtctgcccgcacaggttatcacaacacagaccca
gtccaggctacagcttcccaaggaagtgctacaaagccgattagtgtaacagtgaaatat
caatgttttccagactatagtccacatgtaagccacgcagattctagtagttggagttcc
catgccctttcgtatggatcaaattctaccactggccagtacctaaacaggggcagattg
cgagtgattgatctgtctggtcataggaaacattctaatggtggagatcagttgcatatt
gaactgcaacagagacaattttctgaagtttctgcagatgcaaggtctgatcgagatata
gaactggagctttctgctttggatactgatgctgatcaagatgagggattagaggatgtc
ctggatcgacatttgggtatcgtctcccaaggtgatctgcccagtgacatattgtccaaa
aatggacatcatcataagcacgaagatcatgagcgagaggagcagggccgcaggattgct
gagcaaattgctatcacagaggaacagaagatgatacctgtaacttctggctttaaccag
cctaccatcgcctcgattggttttgtcacctgcccggcagtgactgcttccttcagcatc
aataatttggccctgaaaacatctgcagtcaagttatcagaagatcagaacgacatgaaa
cctgcaacaaatggcgaggctctagtcaatgggagctga
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