KEGG   Scyliorhinus canicula (smaller spotted catshark): 119955841
Entry
119955841         CDS       T11175                                 
Symbol
vps18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
  KO
K20181  vacuolar protein sorting-associated protein 18
Organism
scau  Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04140  Autophagy - animal
scau04142  Lysosome biogenesis
scau04145  Phagocytosis
scau04148  Efferocytosis
scau05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:scau00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagocytosis
    119955841 (vps18)
   04142 Lysosome biogenesis
    119955841 (vps18)
   04140 Autophagy - animal
    119955841 (vps18)
   04148 Efferocytosis
    119955841 (vps18)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    119955841 (vps18)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:scau04131]
    119955841 (vps18)
Membrane trafficking [BR:scau04131]
 Endosome - Lysosome transport
  Tethering complex
   CORVET complex
    119955841 (vps18)
   Hops complex
    119955841 (vps18)
SSDB
Motif
Pfam: Pep3_Vps18 VPS18_solenoid_2nd VPS18_solenoid_1st VPS18_RING_C Clathrin zf-RING_5 zf-RING_16 zf-C3HC4_2 zf_RING_Vps8 zf-RING_Vps41 zf-ANAPC11 zf-RING_UBOX zf-RING_11 zf-RING_2 zf-rbx1 aq_1631 DUF5600 DUF1664 DUF4446 zf-C4H2
Other DBs
NCBI-GeneID: 119955841
NCBI-ProteinID: XP_038638375
LinkDB
Position
2:89549161..89565730
AA seq 978 aa
MSSILDEYEDSQARARCGPAGLPYQQQRLGGTGIGQSGYVSARLEEEKPIFSKQRIDFSP
PSAISHLVVCNNQLCMSLGKDTLLRIDLGKPDQPNHIEVGRKDDARIHKLFLDPSGSHLL
ISLTSSECLYLNRNSQKVRSLSRWKGHLIESVGWNKHLGSESNTGPILVGTSQGQMYEAE
VVVSEDRLFNSSPDQYFKYVYSLEEDGSPAPVCCLEIERSIDGRLFVIATTRKRLYQFVG
RAPEGGEQQLFQPIFSQYTDSLPSFQEFPVSLAYSEISFYTSKLRSSPRSFAWMMGNGVL
YGTLDYSRPDSLLSDVKVWEYSADIEPQLEPPYSIVLTQFHFLLLLSDRVKAICTLNGQL
VFEDVFPDKFGRLLRMVKDSVAGLIWIYTEKAVFRYHIQKESRDVWQMYMNMGKFDLAKE
YCKDRPECLDIVLAKEADHCFQNKKYVESAKYYALTQRYFEEIALKFIEAKQEEALKEFL
LKKLKNLKLEDKTQLTLLVTWLTEIYLNWLGTLEGDEGKRNQFDETREEFRKFLSGSKIK
ECLLNSRSTIYDLLASHGNVEDMVFFSVIMQDYERVVAHHCQHDDYSAALDVMSKYQDPA
LFYKFSPVLMQHIPRQVVDAWIGMQKRLDPKNLIPALVNYSQIGSSEQIDEAIRYLEFCV
HQLDVTDQAIHNYLLSLYAKYKPKALLWYLEQGGSDANHIRYDLKYALRLCAENGHQRAC
VHIYKTMELYEEAVDLALQMDVDLAKSCADMPEEDEELRKKLWLKIARHVVQEEKDVKKA
MVCLSSCNLLKIEDILPFFPDFVTIDHFKEAICSSLQEYNKHIDELKQEMEEATESAKRI
REDIQEMRNKYGVVESQEKCASCDFPLLNRPFYLFLCGHMFHSDCLLQEVVPHLSPYKQT
RLEELQRKLVSSNQAKSRQRPKEGEGSDRGQQSRDQIKADIDDIIAAECIYCGELTIKSI
DKPFIEPQKCEEENNSWL
NT seq 2937 nt   +upstreamnt  +downstreamnt
atgagctcgatcctggacgaatatgaggattcgcaggcccgggcccgctgcgggcccgcc
ggactcccctatcaacagcagcgcctcggcggcacaggcatcgggcaatcaggttacgtt
agtgctcgtctggaagaggagaagccgatcttttcgaaacagagaattgatttcagccct
cccagcgccatcagccacctcgtggtatgcaacaaccagctatgtatgagcttgggcaag
gacactctgctcaggattgaccttggaaaacctgaccagccaaatcatattgaagtgggg
cgcaaagatgatgccaggatccacaagctgtttctggatccctcagggtcccatctcctg
atcagcctcacctccagcgagtgtctatacctcaacaggaattcccagaaagtgagaagc
ctgtcccgttggaaaggacatttgatcgagagtgtgggttggaacaaacatctggggagc
gagagcaacactggccccatcctggtggggaccagccaagggcagatgtatgaggcagag
gttgtggtgtcggaggatcgactgtttaactccagtcctgaccagtacttcaagtatgtg
tacagcctggaagaagatgggtccccggcccctgtctgctgcctggagattgagcgcagc
attgacgggaggctctttgtcatcgccaccacccgcaaacggttgtatcagtttgttggg
agggcgccagagggcggtgaacagcagctgtttcagcccatctttagccagtacactgac
agtttgccgagcttccaggagttcccagtcagcctggcctacagtgagatctccttctac
acctccaagctccgatccagtccccgctccttcgcctggatgatgggtaatggagtgctg
tatggcactttggactacagcaggcccgattccctgctgagcgatgtgaaggtctgggag
tactctgctgatattgagccccagctcgagccgccctactccatcgtcctcacccagttc
cacttcctgctgctgctttcggaccgggtgaaggccatttgcacgctgaatgggcagcta
gtctttgaggatgtgttccctgacaaatttggccgcctcctgcgaatggtcaaggattct
gtggccgggctgatctggatatacactgagaaggcggttttccggtaccacattcagaag
gaatcacgggatgtttggcagatgtatatgaacatgggaaagtttgacctagctaaggaa
tactgcaaagaccggcctgagtgtctcgacattgtccttgccaaagaggccgatcactgt
tttcaaaacaagaaatatgtggaaagcgctaagtactatgccctaactcagaggtacttt
gaggagattgccctgaagttcattgaagccaaacaagaggaggcactgaaggaatttctt
ctgaaaaaactgaaaaacttgaagttggaggacaaaactcagctgaccctgttggtgacc
tggcttaccgagatctacctgaactggttaggcacactcgaaggtgatgagggtaagcga
aaccagtttgacgagaccagggaggagttccggaaatttctgagtggctccaagattaag
gagtgcctgctgaacagccgctcgaccatctatgacctcttggccagccacggcaacgtg
gaggatatggtattcttctccgtgatcatgcaggactacgagcgggttgtggcccaccac
tgccagcatgatgactacagcgcagcgttggatgtcatgtccaagtaccaggaccccgct
ctgttctacaagttctcccctgttcttatgcagcacattcctcggcaggtggtggatgca
tggattggcatgcagaagcggcttgatcccaagaaccttatcccggcgctggtcaactac
agccagattggcagctctgaacagattgacgaagctattcgctacctggagttctgtgtg
caccagctggacgtgactgaccaggcaattcacaattacctgctgtcgctatatgccaaa
tacaagcccaaggccctgctgtggtacctggaacaaggtggatcagatgcaaatcacatt
cgctatgacctgaagtatgcactgcgcctgtgtgcagagaatggccaccagcgggcctgt
gtgcacatttataagacgatggaactgtatgaagaggcagtggaccttgcactccagatg
gatgtagatcttgctaagtcatgcgcggacatgccagaggaagatgaggagcttcgtaag
aagctgtggctgaagattgcccgccatgtggttcaggaggagaaggatgtgaagaaggcc
atggtctgcctctctagctgcaacctgttgaagattgaagacattctacccttctttcct
gattttgtgaccatcgaccattttaaagaggccatctgcagctccctccaggaatacaac
aagcacatcgatgagctcaagcaggagatggaagaggcgaccgagagtgccaagcgaatc
cgggaagacatccaagagatgagaaacaagtacggtgtggtggagtctcaggagaaatgt
gcttcgtgtgacttcccactactgaaccgacccttctatctgtttttgtgtggccacatg
ttccactctgactgcttgctgcaggaagtggtccctcacctttcaccctataagcagacc
aggctggaggagctgcagaggaagctggtgagcagcaaccaggctaaatcccggcagcgc
cctaaagaaggagagggcagtgacaggggacagcagtcccgtgatcagatcaaagccgac
attgatgatataattgcagccgagtgcatctactgcggagaactgacgattaaatcgata
gacaaacccttcatcgagccacagaaatgtgaggaagagaacaacagctggttgtaa

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