Scyliorhinus canicula (smaller spotted catshark): 119956130
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Entry
119956130 CDS
T11175
Symbol
pdlim1
Name
(RefSeq) PDZ and LIM domain protein 1 isoform X1
KO
K23353
PDZ and LIM domain protein 1/2/3/4
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
119956130 (pdlim1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
scau04990
]
119956130 (pdlim1)
Domain-containing proteins not elsewhere classified [BR:
scau04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
119956130 (pdlim1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4749
PDZ
PDZ_6
LIM
PDZ_2
DUF8075
Motif
Other DBs
NCBI-GeneID:
119956130
NCBI-ProteinID:
XP_038638949
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All DBs
Position
22:complement(27270986..27415750)
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AA seq
327 aa
AA seq
DB search
MSQFRIDLLGPSPWGFRLVGGKDFEQPLTISRITPGSKADAAKLCIGDMIVSINGETTEG
MTHLEAQSKIKGCGDELNFLISRSESKMWSPMSHEEGKQNPYRMNLASDQQEAKHIGSAH
NRSAKPFSAASSSSPKVITSQYNSPAGLYSVANVEKVNSAVESRVASSNPEPSKPLEPVK
QPCKPVVDTESEVYKMLQDNQEPEELPRQSASFRVLQEILECEDNEQSDKPSGIRTVKAP
VTKVGSSVGSVQKLPVCETCGSGIVGMIVKVRDQYRHPECYNCTDCGTNLKQKGHFFVLD
AIYCEQHARERSAPPEGYDVVTVFPKS
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagtttcggatcgatctacttggaccttcgccctggggattcaggctggtcgga
gggaaggatttcgaacagccgctgactatctcccggataactccagggagcaaagccgat
gctgccaagctctgcattggggatatgatcgtgtccattaatggggagacaaccgaagga
atgacacacttggaagctcagagcaagatcaagggatgtggagatgaactgaacttcctg
atttccaggtctgaatccaaaatgtggtcacctatgtcacatgaggagggaaaacagaat
ccctataggatgaacctggcgtctgatcaacaggaggctaaacacataggaagtgctcac
aatcggagtgctaagccattctctgctgcttccagctcatctcccaaagtcattacctca
cagtacaacagcccggctggtctttactctgtggccaacgtggagaaagtcaacagtgcc
gtcgagtccagggtagcctccagcaaccccgagccaagcaaacccttggaaccagtcaag
cagccgtgcaaacccgtggtcgacacggagtctgaagtttacaaaatgctgcaggacaac
caggaacctgaggagttacccaggcagtcggcctcattccgcgtgctgcaggaaatcctg
gaatgtgaggacaatgagcagtcggataagccctcaggaatccgtacagtgaaagctcca
gtcacgaaggtcggctcctcggtcgggagtgtgcagaagttgcctgtgtgtgaaacgtgt
ggctctggaatagtgggaatgattgtcaaagtgcgcgaccagtaccgccaccccgaatgc
tacaattgcacagactgcgggaccaatctgaagcagaaaggacatttctttgtgctggac
gcgatctactgtgaacagcacgccagggagcggagtgctccccctgaaggctatgatgtg
gtcaccgtctttcccaagtcataa
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