Scyliorhinus canicula (smaller spotted catshark): 119957126
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Entry
119957126 CDS
T11175
Symbol
actn1
Name
(RefSeq) alpha-actinin-1 isoform X1
KO
K05699
actinin alpha 1/4
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04510
Focal adhesion
scau04517
IgSF CAM signaling
scau04518
Integrin signaling
scau04519
Cadherin signaling
scau04520
Adherens junction
scau04530
Tight junction
scau04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
119957126 (actn1)
04518 Integrin signaling
119957126 (actn1)
04519 Cadherin signaling
119957126 (actn1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119957126 (actn1)
04520 Adherens junction
119957126 (actn1)
04530 Tight junction
119957126 (actn1)
09142 Cell motility
04810 Regulation of actin cytoskeleton
119957126 (actn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
scau04131
]
119957126 (actn1)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
scau04812
]
119957126 (actn1)
04147 Exosome [BR:
scau04147
]
119957126 (actn1)
Membrane trafficking [BR:
scau04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
119957126 (actn1)
Cytoskeleton proteins [BR:
scau04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
119957126 (actn1)
Exosome [BR:
scau04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
119957126 (actn1)
Exosomal proteins of colorectal cancer cells
119957126 (actn1)
Exosomal proteins of bladder cancer cells
119957126 (actn1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
EFhand_Ca_insen
EF-hand_6
EF-hand_8
EF-hand_1
EF-hand_7
EF-hand_5
U3_assoc_6
XisI
FAZ1_C
Motif
Other DBs
NCBI-GeneID:
119957126
NCBI-ProteinID:
XP_038640788
LinkDB
All DBs
Position
2:complement(110652077..110883057)
Genome browser
AA seq
916 aa
AA seq
DB search
MDHYDANHSQTEDYMQPEDDWDRDLLLDPAWEKQQRKTFTAWCNSHLRKAGTQIESIEED
FRDGLKLMLLLEVISGERLAKPERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDG
NAKMTLGMIWTIILRFAIQDISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLG
FCALIHRHRPELIDYANLRKDDPYTNLNTAFDVAEKYLDIPKMLDAEDLLSTLRPDEKAV
MTYVSCYYHAFSGAQKAETAANRICKVLAVNQENEQLMEDYEKLATDLLEWIRRTIPWLE
NRAPENTMQAMQQKLEDFRDYRRLHKPPKVQEKCQLEINFNTLQTKLRLSNRPAFMPSEG
KMVSDINNAWGSLEQAEKGYEEWLLNEIRRLERLDHLAEKFRQKAAIHEAWTNGKEEMLT
AKDFETATLSEVKAILKKHEAFESDLAAHQDRVEQIAAIAQELNELDYWDSPSVNERCQK
ICDQWDNLGALTQKRRDALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIV
HTIEEIQGLITAHEQFKATLPEADRERQAILGIHNEVSKIVQTYHVNMAGTNPYTTIAPQ
DINNKWEKVRHLVPQRDHALMEENARQQSNERLRKQFATQANVIGPWIQTKMEEIGRISI
EMHGTLEDQLNHLRQYEKSIVNYKPKIDQLEGDHQLIQEALIFDNKHTNYTMEHIRVGWE
QLLTTIARTINEIENQVLTRDAKGISQEQMNEFRASFNHFDRDHSGTLGAEEFKACLISL
GYDIGNDAQKRTGMMDSDDFKACLISMGYNLSEAEFGRIMNIVDPNNMGVVTFQAFLDFM
SRETTDTDTADQVMASFKVLAGDKNYITADELRRELPPDQAEYCIARMAPYSGPDAVPGS
LDYMSFSTALYGESDL
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atggatcattacgatgctaaccactcgcagaccgaagactacatgcagccagaggatgac
tgggaccgagatctcctcttggacccagcctgggaaaaacagcagagaaagactttcaca
gcctggtgtaattctcatctccgcaaggcaggcacacagattgagagcatcgaagaggat
tttcgagatggcctcaagctcatgcttctccttgaggttatttctggtgaacgcctggcc
aaaccagaaagagggaagatgcgtgtgcataaaatatcgaatgtcaacaaagccttggat
tttattgccagcaagggggttaaacttgtttccattggagcagaagaaattgtggatgga
aatgcaaagatgacactgggtatgatctggacaatcatccttcgattcgcaattcaggat
atctccgtggaagagacgtctgcaaaagaagggctcctcctatggtgtcaacgcaagaca
gctccctataagaatgtgaacattcagaacttccacatcagttggaaggacggccttgga
ttctgtgctcttatccatagacaccggccagagcttattgactatgcaaacctgcgaaag
gatgacccttacaccaatttgaacaccgcctttgatgtggcagaaaaatacttggacatt
cccaaaatgctggatgctgaagatcttttaagcacgcttaggccggatgaaaaggccgta
atgacctatgtttcatgttactaccatgcgttctcaggtgcgcagaaggcggaaacggca
gccaatcgaatctgcaaagttctggccgttaaccaggagaatgagcagctaatggaggat
tacgagaagctggctactgacctcctggagtggatccgacgcaccattccctggttggaa
aaccgtgccccagagaacaccatgcaggccatgcagcagaaactggaggatttccgtgac
tatcgccgtctccacaaaccaccaaaagtgcaggagaagtgccagctggaaatcaacttc
aacaccttgcaaacaaaactgcgactcagcaatagaccagccttcatgccatcggaaggc
aagatggtgtcggatataaacaatgcctggggctcactggagcaggccgagaagggttat
gaagaatggctactgaatgaaatcaggaggttggagagactggaccacttagctgagaaa
ttcagacagaaagcagcaatccatgaggcttggaccaatggaaaggaggaaatgctgacg
gcaaaggattttgagacggctaccctgtcagaagtcaaggctatattgaaaaaacatgag
gcctttgaaagtgacctagcagcccatcaagatcgtgtggaacagattgctgcaatcgcc
caggagctgaacgagctggattattgggattccccaagtgtgaatgagcgatgccagaag
atctgtgatcagtgggacaatctgggagccctgacccagaagaggagagatgccttggag
aggaccgagaaacttctggagaccattgatcagttgtatctagaatatgcaaagagggct
gctccctttaacaattggatggaaggtgccatggaggatctgcaggacactttcattgtc
cacactattgaggaaatccagggattgatcactgcccatgaacaatttaaagcgactctt
cctgaggcagaccgggaacggcaggctatcctgggcattcacaatgaggtgtcaaaaatc
gtccaaacctaccacgtcaacatggctggcaccaacccctacacgaccattgcaccccag
gatattaacaacaaatgggagaaggttcgacacttggtgccgcagagggaccatgcccta
atggaggagaatgcccgccagcagtccaatgagaggctgcggaaacagtttgcaacacaa
gccaatgtcattggtccttggattcagacaaagatggaggagatcggccgtatttccatt
gagatgcacggcacactggaggatcaactgaaccacctccgacagtacgagaagagcata
gtcaactacaaaccaaagattgatcagctagaaggcgaccatcagctcattcaagaagca
ctaatctttgacaacaagcacaccaactacacaatggagcatatccgagtgggctgggaa
cagttgctcaccaccattgccaggacgatcaatgaaatcgaaaaccaggtcctgaccagg
gatgcaaagggcatcagtcaggagcagatgaatgagttccgagcctcctttaaccacttc
gacagggaccactctggcaccctcggagcagaggagttcaaagcctgcctcatcagcttg
gggtacgatattggaaatgacgcacagaagaggactggaatgatggacagtgatgatttc
aaagcttgccttatctccatgggttacaatctgagtgaagcagagtttggacgtatcatg
aacattgttgaccccaacaacatgggcgtcgtaacgttccaggccttcctggacttcatg
tctcgggaaaccacagacactgacactgcggatcaggtcatggcctcgtttaaagttcta
gcaggtgacaagaactacatcacggcggatgaactgcgccgtgaattacctccagaccag
gcagaatactgcatcgcaagaatggcaccatacagtgggccggatgccgttccgggctcc
ttggactacatgtccttctccacagcgctctatggcgaaagtgacctctaa
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