Scyliorhinus canicula (smaller spotted catshark): 119957396
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Entry
119957396 CDS
T11175
Symbol
usp39
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2 isoform X1
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119957396 (usp39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
scau03041
]
119957396 (usp39)
Spliceosome [BR:
scau03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
119957396 (usp39)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
119957396
NCBI-ProteinID:
XP_038641354
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All DBs
Position
26:10879399..10925187
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AA seq
504 aa
AA seq
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MAAVKRQLEAAESGDEAELESAASKIARIHSQEEEDDRSRHCPYLDTINRSVLDFDFEKL
CSVSLSHINAYACLVCGKYFQGRGLKSYANIHSVQVGHHVFLNLHTLKFYCLPDNYEIID
SSLEDITYVLKPTFTKQHIANLDKQSKLSRAYDGTTYLPGIVGLNNIKANDYANVVLQAL
SNVPPLRNYFLEEENYKDIKRPPGDIMFLLVQRFGELMRKLRNPRNFKAHVSPHEMLQAV
VLCSKKRFQITKQGDAVDFLSWFLNALHMALGGNKKKKTIINSVFQGSMRIFTKKLPPPD
LTPEEKEQLLEMEEFKESMTESTFLYLTLDLPTAPLYKDEKEQLIIPQVPLFNILAKFNG
ITEKEYKTYKENFLKRFQLTKLPPYLIFYIKRFTKNNFFIEKNPTIVNFPITNVDLREYL
SEEVQAIHKHTTYDLIGNVVHDGKPGEGAYRVHVLHHGTGKWYELQDLQVSDILPQMITL
SEAYIQIWKRREDSDDSVSSQKGA
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggtgaagcggcagctggaggcggcggaaagcggggacgaggcagagctggag
tcagcagcctcgaagattgcaagaattcattctcaggaagaggaagatgatcgaagcaga
cactgcccctatttagacactatcaatcggagcgtgctggattttgactttgaaaagctg
tgctcagtctcgctatcccacatcaatgcttacgcttgcctggtttgtggcaaatacttc
caaggacgaggcctgaagtcctacgccaacatacacagtgttcaggtcggacatcacgtc
tttctgaatctacatacgctgaagttctactgcctcccggacaattacgaaatcattgac
tcctctctcgaggacatcacgtatgtactgaagccaaccttcacaaagcaacacattgca
aacctggacaagcagtctaagctgtcgcgggcgtacgatggaaccacctatctgccagga
attgtgggactcaacaacatcaaggccaatgactacgctaatgtggtgctgcaggccttg
tcgaacgtgcctccgctgcggaactatttcttggaggaagaaaactacaaggatatcaag
cggcctcctggcgacatcatgttcctcctggtgcagaggtttggagagttgatgagaaaa
ctccggaacccgaggaacttcaaggcgcacgtttccccgcacgagatgctgcaggcggta
gtcctgtgcagcaagaaacgtttccagattaccaagcaaggtgacgctgtcgactttctg
tcctggttcctgaatgcacttcatatggcgttgggagggaacaagaagaagaaaaccatc
attaacagcgtgttccagggatccatgcggatatttacaaagaagctacccccgccagat
ctgacaccggaggagaaagagcaactgctggaaatggaggagttcaaagagtcgatgacc
gagtccactttcttgtacttgacgcttgacctgcccactgcccctctgtacaaagatgag
aaggagcagctgatcattccccaggtcccgctcttcaacatcctggcaaagttcaacggc
atcacagagaaggaatataaaacctacaaggagaatttcctgaagaggttccagctgaca
aagctcccaccgtacctcatcttctacatcaagagattcacaaagaataacttcttcata
gagaagaacccgaccattgtcaacttcccaatcaccaatgttgatctgagagaatacctg
tctgaggaggttcaggccatccacaaacacaccacctacgacctgattgggaatgtggtc
catgacgggaagccgggtgagggagcgtaccgggtccacgtgcttcaccatggcaccgga
aagtggtacgagctgcaggatctacaagtatctgatatcttgccacagatgatcactctc
tctgaggcctacattcagatctggaaaaggcgcgaggacagcgatgacagtgtgtccagt
cagaaaggagcgtga
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