Scyliorhinus canicula (smaller spotted catshark): 119957510
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Entry
119957510 CDS
T11175
Name
(RefSeq) calcium-activated potassium channel subunit alpha-1-like isoform X1
KO
K04936
potassium large conductance calcium-activated channel subfamily M alpha member 1
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
119957510
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
scau04040
]
119957510
Ion channels [BR:
scau04040
]
Voltage-gated cation channels
Potassium channel, calcium- and sodium-activated (KCa/KNa)
119957510
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Slo-like_RCK
Slowpoke_C
BK_channel_a
Ion_trans
Ion_trans_2
TrkA_N
ParG
Motif
Other DBs
NCBI-GeneID:
119957510
NCBI-ProteinID:
XP_038641558
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Position
26:complement(23854497..23977223)
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AA seq
1285 aa
AA seq
DB search
MSSHRNNNTDLISNLVFGDSRNDIRKPSRNCRIMSQDMWWGAIGSSFTVFLGGMLFILLY
RGLRYSWMVLLQIYQGERTLWMNMRKKSMLQTHEITISGRHKISHVVLDQLRKGLSDEEI
EELNARQTSKVKDVSLNFAVQEWAQRMISAQSLTGRVLVMMVFLLSFGSLFIYFVKSIEN
NESFKVVLNTLQTVDLCFNVFFLFYFGLRFLAAVDKLRFWYELNSIVDFFTIPPVIVALY
FHKDCIGLRFMRSLRLLQLPEILQYLRILKRNTKIKLASLLSVFLGTWFTAAGFIHTIEN
SGDPWLKTPNEQTLTYWQCVYLLMVTMSTVGYGDLTARTTVGQVFMVFFIILGLALFASH
VPEIIEIIGSHRKYAGKYKRFTGKTYVILCGHITLNSLHDFLKDFTCKEREEISTEIIVM
ENINPGLELQALFKRHMTEMEFFQGSVMNPSDLDRIRPDIADACLILADKNCLNPEAEDS
TNIMRAIAVKQYCPEIRVIAQVLQYHSKAYLQNLPSWDMKKRDSVICLSELKMGFIAQNC
IVPGFSTLLANLFVKKSKEELKTGTWLDIYQEGLSQELYTEFLSDTFVGMTFSSVCEVCY
IRLKLLLIAIKYRNSTDEISILINPGSRVLIQEQTLGFFIAKKRYLVNRANIYCSECHAD
IMDPRRIKKCGCKRTYVPEDLYYSVSRRVSLEVLTMDNQSQGKPEKRSNKVLVKLDSTGM
FHWCPPKGITQVTLNRSMASRLRLSKHVIVCIFSEPQCPGIGLRNFIMPLRASSFAYDEL
KSIVIVASLEYIDQEWSTISNFPKVFILPGSPLCRADLKAVSIGSCDMTVIISSNRTNVL
EKALEDKECILATLNIKAMVFEESLDSNNLFTAFISGNDNQSVNISFKEDKHYYRIPIIT
ALVHDANVHFLDQEDRDDPDTEFYLTQPYASGCVFASNILNSLMCTTYFNDNILMLIRTL
VTGGGAPELEEQLADEDALRGSIHVQGKEGQRDRCKLARISLCDERFSEFAERATYGDLF
CKALNIYGILCFGIFRLQDPEKQSKKRFVITNPSPLFELNNTDFIMCSVPFSDTQTMATA
AYCQKNFSSKFIPLHSLTRKSSMRFTKVHQELDDTSELKLKDEQRLTDAKHVSISKVAED
GLRVPSKSKLKNLEQATIEQVKEILKTGDRMKISKDKIKSIDFTMSEYSKEEPKYDEENV
PEVLKEESQFDKEATAGESKDEETSGEEITAGKSNEEETSGEEITAGKSNEEEKSGDKIT
AGKSNEEEKSGEEITAGKSNEDEKV
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagtcacagaaacaacaatactgatctgatcagcaacctggttttcggtgatagc
agaaatgacatcaggaagccaagtcgtaactgtcggatcatgagccaggacatgtggtgg
ggcgctatagggtcctcctttacagtattcctcggaggcatgctcttcattctgttatat
cgaggcctgcgctactcatggatggttctgcttcaaatatatcagggcgaaaggactttg
tggatgaacatgaggaagaaaagcatgttacagactcatgaaatcaccatcagtggaagg
cacaagatcagccatgttgtcctggaccaattgagaaaaggcttgtcagacgaggagatt
gaagaactgaatgccaggcaaacttcgaaagtaaaggatgtcagtctgaatttcgcagtg
caggaatgggcgcagcgaatgatatcagctcagtcactgactggcagagtgcttgtaatg
atggtgtttttactcagctttggatcgctcttcatctacttcgtaaaatcaatagagaac
aatgaaagcttcaaagtggttttgaatactctacagacggttgatctgtgcttcaatgtg
ttctttttattttactttggactgcgcttccttgcagctgttgacaagcttcgcttctgg
tatgagctcaactccattgtcgacttcttcaccatccctcccgttattgtcgcactatat
tttcacaaggactgtattggtttgaggtttatgaggtctctccgcctgctgcaattgcct
gaaatactgcaatatttaaggatcctgaagagaaatacaaaaatcaaattggcaagcttg
ctgtctgtctttttgggtacatggttcacagcagctggtttcatacacacgattgaaaat
tcaggagatccctggttgaaaacgcccaatgaacaaaccttaacctattggcagtgtgtc
tacctactcatggtgaccatgtcaacagttgggtatggtgacttaactgccaggaccact
gttggccaggtcttcatggtattcttcatcatcttgggcctggccctgtttgcaagtcat
gtccctgagattattgaaattatcgggagccaccggaaatacgctggtaaatacaaacgg
ttcacgggtaaaacatatgtcatactctgtggacacattacactcaacagtctccatgat
ttcctgaaggacttcacttgcaaagaaagagaagaaatttcaacagaaattatagttatg
gagaacattaaccctggcctcgagcttcaggcccttttcaaacgtcacatgactgagatg
gagtttttccaaggatcggtgatgaaccccagtgatttggacaggattcggccggacatt
gcagacgcctgtttgatcttggcagacaaaaactgcctgaatcctgaagcggaagattct
acaaatatcatgagggcaattgctgtcaagcagtactgtcctgaaataagagtgattgca
caggtactccagtatcacagcaaggcctaccttcagaacctcccaagctgggacatgaag
aagagggatagtgtgatctgcctatcagagttgaagatgggttttattgcacagaactgc
atcgtgccaggtttctccacactgctggccaacctctttgtcaagaagtccaaagaagag
ttaaaaactggaacctggctcgatatataccaagagggactgagccaggagctttacacc
gagtttctgtcagacactttcgtaggcatgaccttcagctctgtgtgcgaggtgtgctac
attcgattgaagctattattaatagctattaagtataggaacagcactgatgagatcagt
atattgatcaacccaggctccagggttctgattcaggagcaaactcttggattcttcatt
gccaagaaacgttacctcgtcaacagagcaaacatttactgcagtgaatgtcacgctgat
attatggaccccaggcggatcaagaagtgtgggtgcaaacgaacatacgtccctgaggat
ctgtattactctgtgagcagaagggtatcgctggaggtactgacaatggacaaccagtca
cagggaaagcctgaaaaaaggtcaaacaaagtgttagtgaaattggattccactggcatg
ttccactggtgccctccaaagggcatcactcaagtaacactgaatcgatcaatggcatct
cgactgcggctttccaaacacgtgatagtctgtatcttcagtgagccgcagtgccctgga
atcggcctgcgcaatttcatcatgccccttcgagcaagcagcttcgcctacgatgaactc
aagtccattgtgattgtggcctccctggagtacatagaccaggagtggtcgaccatcagc
aacttccccaaggtcttcattctgccgggttcaccgttatgccgcgccgacttaaaagca
gtcagcatcggatcttgcgacatgactgtcatcatatcgtcaaaccggacaaacgtactg
gagaaggccctcgaggacaaggagtgcatcttggcaacactcaatatcaaggcaatggtc
tttgaagaatccttggattccaacaatcttttcacagcatttatttcaggaaatgacaat
caatctgtgaatatttcattcaaagaagacaagcactactatagaattcccatcatcact
gcacttgttcacgatgccaatgtccactttttggaccaggaggaccgcgatgacccggat
acggaattttacctaacgcagccatatgccagtggatgtgtgtttgcatccaatattttg
aattccttgatgtgcacaacatatttcaatgacaacatactgatgctgatacgcaccctg
gttacagggggtggagccccagagctcgaagagcagttggctgatgaggatgccctgaga
ggtagcatccatgtccagggcaaagagggacagcgggaccggtgcaagctggcacgaatc
agcctgtgtgacgagcgtttttcagagtttgcagaacgagccacgtacggggatctgttc
tgcaaagctctgaacatctacgggatactttgctttgggatatttcgattgcaagatcca
gagaagcaatcaaagaagcgattcgtcatcacaaacccctcccctttatttgaacttaac
aacacagacttcatcatgtgctctgtgcctttttccgacacgcaaaccatggctactgcc
gcctactgtcagaagaatttctcttccaagttcatcccattgcactcattgaccagaaaa
agctccatgagatttacaaaggttcatcaggaactggacgacacgagtgaattaaaacta
aaggatgagcagagattaactgacgctaaacatgtgagcataagtaaagttgctgaagat
ggtttgcgagttccctccaaaagtaagctgaaaaacctggaacaagctacgattgagcag
gtgaaggaaattctgaaaacaggtgaccggatgaagatttcaaaggataaaataaaatct
attgacttcacaatgtctgaatattcaaaggaagagccaaaatatgatgaagaaaacgta
cctgaagtattaaaggaagagtcacaatttgataaagaagccacagctggagaatcaaag
gacgaggaaacatctggtgaagaaatcacagctggaaaatcaaatgaagaggaaacatct
ggtgaagaaatcacagctggaaaatcaaatgaagaggaaaaatctggtgacaaaatcaca
gctggaaaatcaaatgaagaggaaaaatctggtgaagaaatcacagctggaaaatcaaat
gaagatgaaaaagtctga
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