Scyliorhinus canicula (smaller spotted catshark): 119957518
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Entry
119957518 CDS
T11175
Symbol
vti1b
Name
(RefSeq) vesicle transport through interaction with t-SNAREs homolog 1B
KO
K08493
vesicle transport through interaction with t-SNAREs 1
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
119957518 (vti1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
scau04131
]
119957518 (vti1b)
Membrane trafficking [BR:
scau04131
]
SNARE
SNAP-25[N] (Qb)
Vti1
119957518 (vti1b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
V-SNARE
V-SNARE_C
Sec20
YqjK
Tlp
DUF4200
DUF4407
DUF1664
PAP1
DUF3958
Motif
Other DBs
NCBI-GeneID:
119957518
NCBI-ProteinID:
XP_038641576
LinkDB
All DBs
Position
2:116267868..116280644
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AA seq
224 aa
AA seq
DB search
MSSEDFEKLHEAFGSVYEDLRRQCEQLSAYSGEQKKRFIREIDEKADEANEVLDGMEKEI
KNAPPAYRNQMNIQIRSYRKNVSKLQRDVRSNDIGYGMHSDVKYTVYNAENEQSNYSSSQ
RALLLQGTDSLNRATQSIDRSHRIAAETDQIGSDIIEELGGQREQLERSKDRLINTGENL
SRSRKMLRAMSRRVMTNKLLLGIIIILEVAILAAVVYFKFFRKH
NT seq
675 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccgaggactttgagaagctgcacgaagcgttcggtagtgtttatgaggatttg
aggcgccagtgtgagcagctgtccgcgtattcgggagaacagaagaaaaggtttattcga
gaaatagatgaaaaagccgatgaagcaaatgaggtcctggatgggatggaaaaggaaata
aagaacgcaccacctgcgtatcgtaatcagatgaatatacaaattcgttcgtacagaaaa
aatgtgagcaagttacagcgggatgttagaagcaatgacattggatatggaatgcatagt
gatgttaagtacactgtgtacaatgctgaaaatgaacaaagtaattactcatcttctcag
cgtgctttgcttttgcaaggaacagacagtctcaacagagctacccagagtatagaccgt
tctcataggatagcagcggagactgatcagataggttcagatataatcgaggaacttggt
gggcaacgtgagcaactggaacgttcaaaagataggctaataaacacaggtgagaatctg
agccggagccgcaaaatgctgcgtgccatgtccagaagggttatgacaaacaagttgcta
ctgggtatcatcatcattttggaagtggcgattctggcagctgttgtatatttcaagttc
ttccgcaaacattaa
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