Scyliorhinus canicula (smaller spotted catshark): 119957722
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Entry
119957722 CDS
T11175
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04137
Mitophagy - animal
scau04140
Autophagy - animal
scau04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
119957722
04137 Mitophagy - animal
119957722
04148 Efferocytosis
119957722
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
scau03000
]
119957722
Transcription factors [BR:
scau03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
119957722
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAS_11
PAS_3
PAS
HIF-1
PAS_9
HIF-1a_CTAD
PAS_4
Motif
Other DBs
NCBI-GeneID:
119957722
NCBI-ProteinID:
XP_038641728
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All DBs
Position
27:21467447..21500650
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AA seq
778 aa
AA seq
DB search
MDTDWISLYPPGTTRSARADLDSQFDGFLLRALDGFIMVLSEEGDIVYLSENVDRYLGLT
QLDLVGHSVFEFVHPCDEEELKDLVTLQQGMPVKQDGHTERDFFMRMKSTLSSRGRTVAI
KSATWKVLHCTGHMKRCEVSSKIPDCEFPESPMSFLVMICEPIPHPSTIEMALDTKTFLS
RHSLDMKFTHCDQKITDLIGYHPKAMLGHTSYEFYHSLDFNHMTKTHRTLLSKGQVTSDH
YRFLANNGGYVWLKTQATAIYNSKNSRPECIVCINFVLSAVLEDTVIFSLDQTRGIRELA
ADLGKSQDLLTQWNDNPEKLEELAPTPGDTIVPLELTARLGSKAFHFTKTLSEDGEVTLP
PEEFCTPELCQLLSPIFGHSEGLRWKSSKGQDTEPLNQVLESERKKAKTPKATIPGLGND
ESSDMKCDIKDFCFNMEVVQNLIALDSKAEETETDQVSTELDLEMLAPYISMEEDFQLIN
FESAEEKGGQACGNEHPDTDPNARDATRDDSSEEKADTAPFRPRSSSLHSVRPSTQSLRQ
DPEPQGGPVTLQRSSSAADLSETRALSPSNTSIAFGGPAFTLAVQNVLLALFQPQTTVSP
SETGNPSSHIPSTSHQGAESLMDGVGLEPSDRLDSVGTESTTPGGTSRQSPSKQRELDMW
AIGKDQEKVNPQMLALRNLKRKHSVQHGNRQDSIPDVSRVAEMVQVTVKRLKKIAKSKSS
AEAKHPFPATPMTLTMQLLAKEISGPPSLTGYDCEVEAPNRHPLLHGAELLKALDQVS
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atggacactgactggatctctctctatcccccagggacaacaagatcagcgagggctgat
ctggacagtcagttcgatgggtttctcctccgagccctcgatggtttcatcatggtattg
tcggaagaaggagacattgtttatctgtccgagaatgtcgacagatatcttggactgacc
cagttggatctagttggacacagcgtcttcgagtttgttcacccatgtgatgaagaggag
ctgaaggatttagtgactctgcagcaaggcatgcctgtgaagcaagacggccacacggag
agagatttcttcatgaggatgaaatccactctatccagtcgcggacgcactgtcgccatc
aaatcagcaacgtggaaagttctgcactgcacgggacacatgaagaggtgtgaggtgagc
agcaagatacccgattgcgaattcccggaatccccgatgtccttcctggtgatgatctgt
gaacctattccacacccatccaccattgagatggcgttggacaccaagacattcctgagt
cgccacagcctggacatgaagttcactcactgtgatcagaaaatcactgatctgattggt
tatcacccaaaggcaatgcttggccacacttcctacgaattctaccattcgctggacttc
aatcacatgaccaagacacatcgcaccttgctgagtaagggacaggtcacctcagatcat
taccgttttctggccaacaatgggggctatgtctggctcaagacccaggccaccgcgatc
tataacagcaagaactcgcggcctgaatgcatcgtgtgcatcaactttgtgctcagtgca
gtgctggaggacacggtcatcttctccttagaccagacccgcgggatccgggaactggcc
gctgatctcgggaaaagccaggatctcctcacccagtggaacgataaccccgagaaactg
gaagagctggcaccaactcctggagataccatcgtaccgctggagttgacagctcggttg
ggttcaaaagctttccacttcaccaaaacgctctccgaagacggtgaggtgacattgcca
ccggaggaattctgtacccccgaactctgccaacttctgtcccccatctttggccattca
gagggattgagatggaagagcagcaaagggcaggacacggagccactaaaccaggtcctg
gagagtgagaggaaaaaggccaagactccaaaggctacaatccccggactggggaacgat
gaaagttcagacatgaagtgtgatattaaggatttctgcttcaacatggaggttgttcaa
aatctgattgcactcgacagcaaagctgaggagactgagacagaccaggtatctacagag
ctggacctggagatgttagccccctatatctccatggaggaagacttccagctcattaac
ttcgaatctgctgaagaaaagggcggacaggcctgtggcaacgagcacccggacacagac
cccaatgcccgagatgccacaagggatgactcttctgaggagaaggcagacactgccccc
ttccgccctcgctccagcagtctgcactctgtccggcccagcactcagagcctgaggcag
gaccccgagcctcagggaggccctgtcaccttgcaacgttccagcagcgcagctgacctc
agcgagacccgagctctgagccccagcaacacctcgatagcctttggggggccagcattc
acgctggccgtgcagaatgttctgctggcattattccagccccagaccacagtcagtccc
tccgagacggggaatcccagcagccacatacccagcaccagtcatcaaggtgcggaatcg
ttaatggatggagttgggctcgaaccgagtgaccgactggactcagttggaactgagagc
acaaccccaggtggaaccagccggcagtcaccatccaaacagagggagctggacatgtgg
gcaattgggaaagaccaggagaaagtcaatccccagatgttggcccttcgtaatctaaaa
cgtaaacactccgtgcagcatggcaaccgacaggactccattccggatgtttccagagtt
gccgagatggttcaggtgacagtgaaacggctgaagaaaatagcaaagagcaaaagtagt
gcagaggcgaaacatccgttcccagccacaccgatgacgttgaccatgcaattgcttgcg
aaggagatctccggcccaccatcgctgaccggttacgactgtgaagttgaggctccgaac
aggcatcccctcctacacggagcagagctgctgaaagccctggatcaggtctcctga
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