Scyliorhinus canicula (smaller spotted catshark): 119958073
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Entry
119958073 CDS
T11175
Symbol
smarcd1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
119958073 (smarcd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scau03021
]
119958073 (smarcd1)
03036 Chromosome and associated proteins [BR:
scau03036
]
119958073 (smarcd1)
Transcription machinery [BR:
scau03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
119958073 (smarcd1)
Chromosome and associated proteins [BR:
scau03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
119958073 (smarcd1)
PBAF complex
119958073 (smarcd1)
GBAF(ncBAF) complex
119958073 (smarcd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
DivIC
Motif
Other DBs
NCBI-GeneID:
119958073
NCBI-ProteinID:
XP_038642223
LinkDB
All DBs
Position
28:complement(16143041..16177868)
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AA seq
475 aa
AA seq
DB search
MQSATRSKLFEFLAHGLRPGMPPGSRMPPQGASMGPPGPSYGGSPAVRPGMPQSMMDQSR
KRPAPQQIQQVQQQAAQNRNHNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQT
IMRKRLDIQEALKRPIKQKRKLRIFISNTFNPAKPDAEDGEGTVASWELRVEGRLLEDSA
VSKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNV
RCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDSHEREFINCD
KYLQQIFECQRMKFSEIPQRLHALLMPPEPIIINHIISVDPNDQKKTACYDIDVEVDDTL
KTQMNSFLLSTASQQEIAALDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQC
RDLKSMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgcagtcagcaaccaggagtaaactctttgaatttcttgcccacggtttgcgcccaggg
atgcctccgggcagccgcatgccacctcaaggtgcttccatgggtccgccgggtccttcg
tatggtggaagtccggcagtgcgaccaggcatgcctcagtcgatgatggaccagtctcgc
aaacggccagctcctcagcagattcaacaagtacagcaacaagcagctcagaaccgcaat
cacaatgcgaagaagaagaagatggcagataaaattctacctcagagaattcgggagctt
gtgccagagtctcaagcctacatggatttgctggcgtttgagaggaagcttgaccagact
ataatgagaaaacgtctggacatccaggaagcattgaaaaggccaataaagcaaaagcga
aagcttcgtatatttatttcgaatacattcaatcctgcgaaacctgacgcagaagatgga
gaaggaactgtggcatcctgggaacttcgggtcgaaggcagacttctcgaagattcagct
gtatcgaagtacgatgctactaaacagaagcggaagttttcctcattcttcaaatccctt
gtgattgagctggataaggatctctatgggcccgacaaccacctggttgagtggcacagg
acagctacaacccaagagactgatggcttccaagtgaaaagaccaggggatgtgaatgtg
cgctgcacagtgttactgatgctggattatcagcctccccagtttaaactggatcctcga
ctggcacgtctgctgggcatccacactcagacaaggcctgtcatcatccaggctctctgg
cagtacattaaaacccacaaactgcaggactcccatgaacgggagttcatcaactgtgac
aaatacctccagcagatctttgagtgtcagcgaatgaagttctcagaaatccctcagaga
ctacacgctctgttgatgccacctgagcccattatcatcaaccatattatcagtgtggac
ccaaatgatcagaagaaaactgcttgttacgatattgatgtagaagtggatgacacgcta
aagactcagatgaattccttcctcctttctactgctagtcagcaagaaattgctgctctt
gataataagatccatgaaacaatagagaccattaaccagctcaagacacagagggagttc
atgctaagttttgccagagatccacagggcttcatcaacgactggctgcagtcccagtgc
cgtgatctgaagtctatgactgatgtggtaggaaacccagaggaggagcgcagagcagag
ttctacttccagccctgggctcaagaagctgtctgcagatacttttattccaaggtgcag
cagagacgacaggagcttgagcaagccctcggcatccgtaacacataa
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