Scyliorhinus canicula (smaller spotted catshark): 119958176
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Entry
119958176 CDS
T11175
Symbol
pan2
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119958176 (pan2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scau03019
]
119958176 (pan2)
Enzymes [BR:
scau01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
119958176 (pan2)
Messenger RNA biogenesis [BR:
scau03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119958176 (pan2)
mRNA degradation factors
3'-5' decay
Pan complex
119958176 (pan2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_like
WD40_CDC20-Fz
VPS11_N
Motif
Other DBs
NCBI-GeneID:
119958176
NCBI-ProteinID:
XP_038642449
LinkDB
All DBs
Position
28:complement(3177928..3364874)
Genome browser
AA seq
1206 aa
AA seq
DB search
MNFDGLDSGLGEYSSSLHPGIDPSLDSSIEHSLDPRLDPSLLQNVELEADGVQLDGMSVS
GPESVHLVEGMYSELHRVVAEVGVPVTASHFDLQDELLWVGNHGGHATSFFGPTMERYSS
FQVNATDDIRHIQSIESGVLFLNKNNLKCFTRGGLIMFDYVMDEAEDMHSLLLTDNNSVL
LGGLQNHVIEVDLNAVQENEKYTVEVPGVTIMRQSNRFFFCGHTSGKVSLRDLRSFKVEH
EFDAYSGSLSDLDVHGNLLVTCGFSNRMNGLSCDRFLMVYDLRMMRAISPLQVHVDPLFL
RFIPTYTSRLAIISQSGQCQFCEPTGLASPADIFHINTVGQLVMTFDVSSSKQALVFGDS
GGCVHLWADSPDVTFNAYSRETEFPMPCMVDTLPHLDWNDDLLPLSLIPVPLITESLLSD
WPTANCSVTPRRAPPVDLEILRTMKKVGFIGYAPNPKTKLRNQVPYKLKEMDAEFDSYNQ
IPESPIGREEEPHLYMVPKKYRKVTIKYSKLGLEDFDFKHYNKTLFAGLEPHIPNAYCNC
MIQVLYLLEPIRCHVQNHLCQKEFCLGCELGFLFHMLDLSRGDPCQASNFLRAFRTIPEA
SALGLIMADSDEATGKVNQGRLIQSWNRFILTQLHQETQEQEGPQAYRSVMGSTFGSSGE
SVIGKLFGCEVENCSTCRCGKETVRVSSSLLFTLQYPDMNSADKTIRQYEFAEVLKRSIC
LEQNTQAWCENCEKYQPTVQTRNIRCLPDVLVINCEVNSRKEAEFWKCQAEYELHNKMRK
EDLEAMKMKENNPTEWEALCNAEGLSFYTSIEELKNIWIPCSIKMKLTKNKELEVTNWTE
NEGLSPSEDEENTYLYDLVVTVAHILDPRTGGNLVAHIKVGETYHQRKEGVTHKQWYLFN
DFLIEPVDKCEAVQFDLSWKIPCILYYARRNLNSKYDLTIKNPIEASVLLAEASLARKQR
KCHATFIPLMLNEMPQSSDLVGLDAEFVTLNQEEAELRSDGTKSTIKPSQMSVARITCVR
GQGPNEGVPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLID
VGVKFVGHGLQKDFRVINLMIPKEQVIDTVYLFHMPRKRMISLRFLAWYFLELKIQGETH
DSIEDARTALQLYRKYLKLTKHGIDVDEFRKILKGLYEKGRKMDWKVPEPEGEVQNSPKS
NQFSHL
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atgaattttgatggccttgattctggccttggagaatactcatcgtccctgcaccctggc
attgacccatccttggacagttcaattgaacattcgctggacccaagacttgacccaagc
ttgttgcagaatgtcgaactggaagcagatggtgtccagctggatggcatgtcggtctct
ggacctgaatctgttcaccttgtggagggaatgtattcagagctgcacagagttgtcgca
gaagttggagtccctgtaactgcatcacattttgaccttcaagatgaattgctctgggtg
ggaaatcatgggggccatgcaacctccttctttggtcccacaatggagcgatactcatcc
tttcaagttaacgccactgatgacatacgccacatacaaagcatagaaagcggagttctc
tttttaaataagaataacctcaagtgctttactcgagggggacttataatgtttgactat
gtcatggatgaagctgaggacatgcacagccttcttcttactgacaacaactctgttctt
ttggggggccttcagaatcatgtcatagaagtggacttaaatgcagtacaagaaaatgaa
aagtacacagttgaagttcctggtgttacaatcatgcgacagtctaaccgcttcttcttt
tgtggccatacatcaggaaaggtatccctccgagatttgagaagttttaaagtggagcac
gaatttgatgcttactctgggagcctctctgatttggatgtgcacggaaacctgctggtg
acatgtggcttctcgaatcgaatgaatggtctgtcatgtgatagattcttgatggtgtat
gatctccgtatgatgcgggctatcagcccattgcaagttcacgtagatcctctcttcctg
agatttattcctacatacacatccaggctagcaatcatctctcaatcagggcagtgccag
ttttgtgaaccaacaggccttgcaagtccagcagatattttccacattaacactgtggga
cagttagtcatgacatttgatgtgtcttctagcaagcaagcattggtgtttggagattct
ggaggatgtgtgcatctctgggcagactcgccagatgttacatttaatgcctactcccgt
gagactgagtttccgatgccatgcatggtagataccctaccacacctagactggaacgat
gatctcttgcctttatcgctcattcctgtgcctcttattactgagtctctattgtctgac
tggccaacagcaaattgcagtgttacacccagacgagctccacctgtcgatctcgaaata
ctgcgtaccatgaagaaagttgggtttattggatatgctccgaatcccaaaaccaagctg
agaaatcaggttccatataaactgaaggaaatggatgcagaatttgacagctacaatcaa
atccctgaatctcctattggaagggaagaagaacctcatctgtatatggtgccaaagaaa
tatcgaaaggttactataaaatactcaaaacttggtttggaagactttgatttcaaacac
tacaacaagacgctgtttgcaggtctggagccgcacattcccaatgcttactgcaactgc
atgattcaggtactgtatctgctggagcccatccgctgccatgttcaaaatcacctctgt
cagaaagagttttgcttgggttgtgagcttggatttctgtttcacatgcttgatctttca
agaggcgacccgtgccaggccagcaattttcttcgtgctttccgaactattccagaggca
tcggctttggggttgatcatggctgattctgatgaagcgactgggaaggtgaatcagggc
cgactgatacagagctggaatcgatttatattgacacaactacaccaggagacacaggag
caggagggcccacaggcctatcggagtgtcatggggagtacatttggatcctctggtgaa
tctgtgattgggaagctttttggttgtgaagttgaaaactgtagcacttgtcgctgtggg
aaggaaactgttcgggtttcttcgagtctgcttttcactttgcagtatcctgatatgaat
agtgctgacaaaactattcgacagtatgagtttgctgaagtgctgaagagaagtatttgt
cttgaacagaacacccaggcctggtgtgaaaactgtgagaagtaccagcctacggttcaa
accaggaatattcgatgcttacctgacgttcttgttattaattgtgaagttaacagcaga
aaggaagctgaattctggaaatgccaagctgagtatgaattgcacaacaagatgaggaag
gaagatttggaagcaatgaaaatgaaagaaaataacccaacagaatgggaagcgctttgt
aatgcagaaggcctgagcttctatacatcaattgaggaactgaaaaatatatggatccca
tgttctatcaagatgaaactaactaaaaataaagagctggaagtcacaaactggactgaa
aatgaaggcctgagcccttcagaagatgaggaaaacacttacttgtatgatctagtggtg
acagtggcccacattttagatcctcggactggtggcaatcttgtggctcatattaaggtt
ggggaaacatatcatcagcggaaggagggtgtcactcacaaacagtggtatctgtttaat
gactttctcatagaaccagttgacaagtgtgaagctgtgcagtttgacttgagttggaag
attccctgtattctatattacgctagacggaatctgaattccaagtacgatttaaccata
aagaatccaattgaagctagtgttttgctggcagaggcgtcacttgctagaaagcaacga
aaatgtcacgcgactttcatcccactaatgctgaatgaaatgccccagtccagtgattta
gtgggtttggatgcagagtttgtcacattgaatcaggaagaggcagagctgcgtagcgat
ggaacaaaatccaccataaaacccagccaaatgtcagttgccagaattacatgtgtgcga
ggtcagggaccgaatgaaggtgttcctttcattgacgattacatctccacacaagagcag
gttgtggactacctgactcagtattctggaatcaaacctggggaccttgatgccaaaatt
tcatccaagcacctaaccaccttgaagtcgacatacctgaaactgagattccttattgat
gttggagtgaagtttgtgggccacgggctgcagaaggacttccgagttataaatcttatg
attccaaaggagcaggtgatagacacggtgtatttgtttcacatgcctcggaagaggatg
atttcgttgcgttttcttgcatggtattttctagaactcaagattcagggtgaaacgcat
gacagtatagaggatgctcggacagcgctgcagctctatcgcaagtacctgaaattgacc
aaacacggtatagatgtggacgagttccggaaaatactaaaaggtctatatgagaaaggt
agaaagatggactggaaagtaccagagccagaaggagaggtgcagaatagcccaaaaagc
aaccagttttcccacctctga
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