Scyliorhinus canicula (smaller spotted catshark): 119958193
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Entry
119958193 CDS
T11175
Name
(RefSeq) SWI/SNF complex subunit SMARCC2-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
119958193
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
scau03021
]
119958193
03036 Chromosome and associated proteins [BR:
scau03036
]
119958193
Transcription machinery [BR:
scau03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
119958193
Chromosome and associated proteins [BR:
scau03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
119958193
PBAF complex
119958193
GBAF(ncBAF) complex
119958193
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
119958193
NCBI-ProteinID:
XP_038642489
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All DBs
Position
28:7553881..7633150
Genome browser
AA seq
880 aa
AA seq
DB search
MTALHLVLRRSPATPYAKSKRGHREEDQEDLTKDMDEPSPVPNVEEVTLPKSVNTKKDSE
SAPVKGGTMTDLDEQEDDNLETAGKDEEDTSAGNKGEQTKNPDLHEDNVTEQTHHIIIPS
YAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRR
NLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSGLVPLQPKA
PQTSASQQMLNFPDKNKEKAADMQNFGLRTDMYAKKNVPSKSKAAASATREWTEQETLLL
LEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQS
GNPVMSTVAFLASVVDPRVASAAAKSALEEFAKMKEEVPSALVEAHVKKVEDAAKVTGKG
DPTYGLESSGIAGTTPDEPERLEEGSDEMKSDPQPAEEKKETKENKEVTVEEENKEKQPD
SSKKDEEKTKECESEKENEKAEVEVAETEREKENKEFQEDGAKKDGESEADKKTKLERDI
GEGNLSTAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIM
DREREALEYQRQQLLSDRQAFHMEQLKYAEMRARQQHFQQMHQQQQQQHQLPSGPQASQQ
PAIIPTSVQPVPPAAVQQSTVNQPPSDSIAQSIPQQQTPPTQQPHQPSTPAQPAVLPHGQ
PPFPSQQTPNQLMPSNMPVGIPANMSGNMAAGMPCAVPAIIACSMGSVIAENVPANLPAS
TPNPVHGHVPSSMSGGVTGNLCIGLPGGLPVDLPSSVHPNIAGNIIPSSMSLTSTPASAA
AQSPAIVAAMQGNTSPLAEQGATMQSEVLATPSAAVPPSQ
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcattgcaccttgttttaagacgcagtcctgccacaccatatgccaagtcaaag
cgaggacatcgagaggaggaccaagaggacctgaccaaggacatggatgaaccctcccct
gtccccaacgtagaagaggtcacactaccgaaaagtgtgaacacaaagaaagattctgaa
tctgctccagtgaaaggcggcactatgactgatctagatgagcaagaggatgataatcta
gagactgcaggcaaggatgaggaagacacttctgctggaaacaaaggggaacagacaaag
aatcctgacttgcatgaggacaacgtgacggaacagactcaccacatcatcatacccagc
tatgcagcttggtttgactacaacagcgtccatgccattgagcgacgagctctcccagaa
ttcttcaatggaaaaaacaaatccaaaactccagagatttaccttgcctatcgtaatttc
atgattgacacgtaccgtctgaatccacaggagtacctcacatcaacagcatgtcgtcgt
aatctggcaggggatgtctgtgcaataatgagggtgcacgcttttctcgagcaatgggga
ctcattaattaccaggtggatgcagaaagccgaccgacacccatgggtccccccccaacg
tcacatttccatgtgctcgctgacacaccttctggcctggtgcctcttcagcccaaagct
ccacagacatctgcatcccaacaaatgctcaatttccccgataagaataaagagaaggca
gcagacatgcagaacttcggactgcggactgatatgtacgctaagaaaaatgttccttct
aagagtaaagcggctgcgagtgcgacccgagagtggacggagcaggagacacttttacta
cttgaggcactggagatgtacaaggatgattggaataaagtctcagaacatgtaggcagt
cgcacacaggatgagtgtatcttgcatttcttgcgtttaccgatagaagatccatacctt
gaagattccgaagcttcactcggcccattggcttaccagccaattccattcagccagtcc
ggaaatccagtcatgagcacggtagcattcctggcatcggtggttgaccctcgggtggca
tcagcagctgcaaaatctgcattagaggagtttgcgaagatgaaggaggaagtcccctct
gctctggtagaagctcatgtaaagaaagtagaagatgctgcgaaggtcactggtaaggga
gatccaacatacggcttagagagcagtggaattgcaggaactaccccggatgagccagag
cggttggaagagggcagtgatgaaatgaagtcagacccccaaccagctgaagagaaaaaa
gaaacaaaggaaaacaaggaagtcacggtggaagaggaaaataaagagaaacagcccgat
tcttctaaaaaggatgaagagaaaacaaaagaatgtgaatccgagaaagaaaatgaaaag
gctgaggtggaagtcgcagagacagaaagggagaaagaaaataaggagttccaagaggac
ggagcaaagaaggatggagagtccgaagcagataagaaaaccaaactggagagagatatt
ggtgaaggcaacctatctaccgccgcggctgctgcactcgctgcagctgctgtcaaagca
aagcacctggcggcagtggaggagaggaaaatcaagtcactagtggcactgctggtggag
acacagatgaagaaactagaaatcaaactccgccattttgaagaacttgagaccattatg
gacagagagagagaggcattggaataccagagacaacagcttctgtctgataggcaggcc
tttcacatggagcagctgaagtatgctgagatgagagcacggcaacagcacttccaacaa
atgcatcaacagcagcagcagcagcatcaactcccatctggcccccaggccagccagcag
ccagccatcattccgacatcagtgcagccagtgccgcctgctgcagtacaacagagcact
gtgaaccagcctccaagcgattccatagcacaatccattccacaacagcagaccccacca
acacagcaaccacatcagccgtcgacacccgctcagcctgcagttcttcctcacggtcag
ccgccatttccaagtcaacaaactccaaaccagctgatgcccagtaacatgccagttggc
atacctgcgaacatgtctggtaatatggctgctggtatgccttgtgctgtgccagccatt
attgcatgtagcatgggtagtgtcatcgcagaaaacgttcctgctaacctccctgctagc
acgccaaacccagtgcatggccatgtacccagtagcatgtctgggggtgtcactggcaac
ctgtgtattgggttgccaggaggtttgcctgtagatctgcctagttctgtacatcctaac
atagccggaaacatcatcccctcctccatgtctctaacttccaccccagcgtccgcagct
gctcaaagccctgctattgtagctgccatgcaggggaacacaagtccattggcagagcaa
ggtgccacgatgcagtcagaggtgctggcaaccccgtcagcagcagtgccaccgtcacag
tga
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