Scyliorhinus canicula (smaller spotted catshark): 119961759
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Entry
119961759 CDS
T11175
Symbol
vps16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog isoform X1
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04140
Autophagy - animal
scau04148
Efferocytosis
scau05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
119961759 (vps16)
04148 Efferocytosis
119961759 (vps16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
119961759 (vps16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
scau04131
]
119961759 (vps16)
Membrane trafficking [BR:
scau04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
119961759 (vps16)
Hops complex
119961759 (vps16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_C
Vps16_N
Motif
Other DBs
NCBI-GeneID:
119961759
NCBI-ProteinID:
XP_038644948
LinkDB
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Position
2:169464584..169552502
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AA seq
843 aa
AA seq
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MIKEDISNCLIAVAPYGGPIALMINGSRKEKAPNLRPVVEIYSSSGNRIISFPWKSGIVV
HIGWTIVEDLLFIQDDGTVLIHDIFGTFKRHFSMGNEVLQNRVMEAKIFFTPYGSGVAIL
TGAFRFTLATNIDDLKLRRFPEVPGLQHPPTCWAVLVQDRQTKIVLANGKDLFILDNASC
RAVTPPGLGPQACTFTQIAISFNYKWLALFTDTGNIWMGSSSLKDKLCVVDTNLQTPPKQ
FVWCNRPKSNNPSVVGIWDKLLLIAGNSKETIKFYQDEDVHLVPEVDGVRIISSSSHEFL
HEVPRQISHECQILPKECQKLYIRKMQHLESSKRNAACQDIFRIASMAPGALLLEAHKEY
EKESQKSDEYLREIKEQNLLFEAVEQCIEAAGNEYEPEMQKSLLRAASFGKCFISNFPPD
TFVKMARDLRVLNAIRDYTIGIPLSYPQYKQLTIEVLIDRLVLRRLYPLAINICKYMKIS
EFQGASRILAHWACYKVQQKEEPDDSIARAINNKLGDTPGISYSEIAAKAYECGRTELAI
KLLEYEPRSGEQVPLLLKMKRSQLALLKAIESGDTDLVYTVVTYLKNEMNRGDFFMTLQN
QPVALSLYRQFCKHQEPETLKDLFNQDDNHQELGNFYVRSSYSNETTIEGRVAALQNAVD
EYNKAKNEFAAKITEEQIKLVRCQFRLQKESGKTLLDLSLHETVSTLLLESKHKQAEQLY
KDFKIPDKRFWWLKITALAKKEDWEELERFSKSKKSPIGYMPFVEICVKHHNKYEAKKYV
AKVSPEQKVKGYIMVGDLEQAVEAATERKNESELNTILSKCTSASDQLIIEKINRAKTQI
LKK
NT seq
2532 nt
NT seq
+upstream
nt +downstream
nt
atgataaaagaagacatcagtaactgtttaattgcagttgcaccatatggtggcccaatt
gctttgatgatcaatggatcacgcaaggaaaaagctccaaatttacgacctgtcgtggaa
atctactcctcatcgggaaatcgaatcatttccttcccatggaaaagtggtattgtagtt
cacattggctggactatcgttgaagatctgctttttatacaagatgacggaactgttctg
atccatgacatatttggcacgtttaagaggcacttcagcatgggaaatgaggtgttacaa
aatcgagttatggaggccaagatttttttcactccttatggatcaggagttgctatatta
actggtgcctttagattcacacttgccacaaatatagatgacctcaaactccggcgattc
cctgaagttccaggactccagcacccaccaacatgctgggctgtattggtacaagatcga
cagaccaaaattgttctggctaatgggaaggatttatttattttggataatgcttcctgc
agggctgtgactccccctggccttggaccacaagcctgtacgtttacgcaaattgctatt
tcgttcaattataaatggcttgctctatttacagacaccggtaacatctggatgggttcc
tcgtcattgaaggataaactttgtgtggttgacacaaatctccaaacaccaccaaagcag
tttgtctggtgtaatagacccaaaagcaacaatccttctgtagttggtatttgggataaa
ctacttttgatagcaggaaattcaaaggagaccattaaattttatcaagacgaagatgtt
cacttagtgcctgaggttgatggtgttcgaatcattagttcttccagccatgaatttcta
catgaggttccacgacagatttcccatgaatgtcaaatcttgccaaaagaatgccaaaaa
ctatatatcagaaaaatgcaacatctagaaagcagtaagagaaacgctgcttgtcaagat
attttcagaattgcctcaatggcaccaggtgcacttctgctggaagctcataaagaatat
gagaaagagagccagaagtcagatgaatatttacgagagataaaggaacaaaatctcttg
ttcgaggctgtagagcagtgcattgaggcagcaggcaatgagtatgaacctgagatgcag
aaatctctgctgagggcagcttctttcggtaagtgcttcatcagcaactttccaccagat
acgtttgtgaagatggcccgagatctacgggtgttaaatgccattcgagactataccatt
ggcattcctctcagttatccccaatacaagcagctcactattgaagttctcatagacaga
ttagttttgcgtagactctatcctcttgcaataaatatttgtaagtacatgaaaatatca
gaatttcagggagcaagtcggattttggcacactgggcctgctataaggttcagcagaaa
gaagagcctgatgacagcattgctcgtgcaatcaacaacaaacttggggacactcccgga
atttcctattctgaaattgctgccaaggcttatgaatgcggtagaacagagctggcaata
aagcttttagagtacgagccaaggtctggtgagcaggtgcccttgctgttgaagatgaaa
aggagtcagttggcactacttaaagcgatagaaagtggagacactgatttagtgtatact
gttgtgacatatctaaagaatgagatgaacaggggagatttctttatgacgctccagaat
caaccagttgcactgagtctttatcgacagttctgtaagcaccaggagccagagacactc
aaagatctattcaaccaggatgataaccaccaggagcttgggaatttctatgtgcgttcc
agttactctaatgaaacgacaattgaagggcgagtagctgctttgcagaatgctgtcgat
gaatataataaagctaaaaatgaatttgctgccaagatcacagaagaacagataaaattg
gtgcgctgtcagtttcgtttgcaaaaagaatctggtaaaacgcttctagatttatccttg
catgaaactgtttccacattgttactggaaagcaagcacaaacaagctgagcagctttac
aaagacttcaaaattcctgacaaaaggttttggtggctgaagattactgcactggcaaag
aaagaagactgggaggaacttgaaagattttctaaaagcaagaagtccccaataggatat
atgccttttgttgaaatctgcgtaaagcatcataacaagtatgaagctaagaaatacgta
gcaaaggtcagtccagagcagaaagtgaaaggatatataatggttggagatctagagcaa
gctgtggaggctgcaacagaacgcaagaatgaaagcgagttgaacactattctttcaaaa
tgtacatcagccagtgatcagttaattatagaaaaaattaacagagccaaaacccagatt
ttaaagaaatga
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