Scyliorhinus canicula (smaller spotted catshark): 119961777
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Entry
119961777 CDS
T11175
Symbol
hspd1
Name
(RefSeq) 60 kDa heat shock protein, mitochondrial
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119961777 (hspd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scau03019
]
119961777 (hspd1)
03110 Chaperones and folding catalysts [BR:
scau03110
]
119961777 (hspd1)
03029 Mitochondrial biogenesis [BR:
scau03029
]
119961777 (hspd1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
scau04147
]
119961777 (hspd1)
Enzymes [BR:
scau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
119961777 (hspd1)
Messenger RNA biogenesis [BR:
scau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
119961777 (hspd1)
Chaperones and folding catalysts [BR:
scau03110
]
Heat shock proteins
HSP60 / Chaperonin
119961777 (hspd1)
Mitochondrial biogenesis [BR:
scau03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
119961777 (hspd1)
Exosome [BR:
scau04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
119961777 (hspd1)
Exosomal proteins of other body fluids (saliva and urine)
119961777 (hspd1)
Exosomal proteins of breast cancer cells
119961777 (hspd1)
Exosomal proteins of colorectal cancer cells
119961777 (hspd1)
Exosomal proteins of bladder cancer cells
119961777 (hspd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
119961777
NCBI-ProteinID:
XP_038645009
LinkDB
All DBs
Position
2:174530131..174555147
Genome browser
AA seq
574 aa
AA seq
DB search
MLRLPTVLRQVRPVSRLLAPHLTRAYAKDVKFGSEARALMLKGVDLLADAVAVTMGPKGR
TVILEQSWGSPKVTKDGVTVAKAIDLKDKYQNIGARLVQDVANNTNEEAGDGTTTATVLA
RSIAKEGFEKISKGANPVEIRRGVMLAVDHVIGELKRMSKPVTTPEEIAQVATISANGDK
EIGELISDAMKKVGRKGVITVKDGKTLHDELELIEGMKFDRGYISPYFINTAKGQKCEFQ
DAYLLLSEKKISNVQSIVPALEIANAHRKPLVIVAEDIDGEALSTLVLNRLKVGLQVVAV
KAPGFGDNRKNQLKDMAIATGGTVFGDEVLGLNVDDIQAHDFGKVGEVVVTKDDTMLLKG
KGDKTAIEKRIQEIVEMLEVTTSEYEKEKLNERLAKLSDGVAVLKIGGTSDIEVNEKKDR
VTDALNATRAAVEEGIVLGGGCALLRCIPALGTLQPVNEDQKIGIEIVGKALKIPAITIV
KNAGAEGSLIVEKILQSPPEIGYDAMAGEFVKMVEKGIIDPTKVVRTALLDAAGVASLLA
TAETVVTELPKDDKAQAMGGMGGMGGAGMGGDMF
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgcttcgtttgccgaccgttttgcgccaggtaaggcccgtgtctcgcctacttgcacct
catctcacccgagcctacgccaaggatgtgaaattcggctccgaggcccgggctctgatg
ctgaaaggagtggatcttctcgccgatgctgtagcagttaccatggggccaaagggtcga
acagttattctagaacagagttggggaagtcctaaagtgacaaaagatggagtaacagta
gctaaagcaatagatttaaaagataaataccaaaacattggtgctaggctagtacaagat
gttgccaacaacacaaatgaagaggcaggcgatggaaccaccacagcaacagttcttgca
agatccatcgctaaagaaggatttgaaaaaatcagtaaaggagctaatccagtggagata
agacgaggtgtaatgctggctgtagatcatgtaattggtgagctgaaaagaatgtccaaa
ccagttacaaccccagaagaaattgctcaggtagcaactatttcagccaatggagacaag
gaaattggtgagcttatctctgatgcaatgaaaaaagttgggcgaaagggtgtcatcact
gtcaaggatggcaaaacactccatgatgagcttgaactcatcgaaggaatgaaatttgat
agaggttacatctcaccgtacttcatcaacacagccaaagggcaaaaatgcgaattccaa
gatgcgtaccttctgcttagtgaaaagaaaatctcaaatgtacaatccattgtgcctgcc
ttggagattgccaatgcacaccgtaaacctctagttattgttgctgaagatattgatggc
gaagcgctcagcacattggttttgaataggctgaaggttggcttgcaagttgtagctgtt
aaagcacctggatttggtgacaacaggaaaaaccagctgaaagatatggccatcgccact
ggtggtacggtatttggggacgaagtacttggtctgaatgtggatgatatccaggcgcat
gattttggtaaagttggtgaagtcgtagtcaccaaagatgacaccatgctgttgaaaggc
aagggtgacaagactgcaattgaaaagcgtattcaagaaattgtggaaatgttggaagtt
acaacaagtgaatacgagaaggaaaagctaaacgaaaggctggccaaattatccgacggt
gttgcagtgctgaagattggtggcacgagtgacatagaggttaatgagaagaaagaccga
gtaactgacgcacttaatgctactcgagctgctgtggaggagggtattgttcttggtggt
ggatgtgctctattgcggtgtatcccagcattgggtacacttcaaccagtcaatgaagac
caaaaaattggaattgaaattgttggtaaagctctgaaaataccagcgatcacaattgtc
aaaaatgctggagctgaaggcagtctaattgtggagaagatcttgcaaagtccaccagag
attggctatgatgcaatggctggggagtttgtgaagatggtagaaaaaggaattattgat
cccacaaaggtcgtgaggactgctttgttggatgcagcaggtgttgcctctctcctagca
acagcagaaactgtagttacagaactcccaaaggatgacaaggcgcaagcaatggggggt
atgggtggcatgggtggtgcaggtatgggtggcgatatgttttaa
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