Scyliorhinus canicula (smaller spotted catshark): 119961822
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Entry
119961822 CDS
T11175
Name
(RefSeq) collagen alpha-1(II) chain-like
KO
K19719
collagen type II alpha
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04510
Focal adhesion
scau04512
ECM-receptor interaction
scau04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119961822
04518 Integrin signaling
119961822
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119961822
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
scau00536
]
119961822
Glycosaminoglycan binding proteins [BR:
scau00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119961822
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Amnionless
RNPP_C
Motif
Other DBs
NCBI-GeneID:
119961822
NCBI-ProteinID:
XP_038645117
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All DBs
Position
2:complement(184781028..185004445)
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AA seq
1420 aa
AA seq
DB search
MQSIVHVCFFLLQVITQVSFTSAQQGTICIHDGNDYEDQETWKPSDCEICVCDNGITLCN
DIECDTLDCPDAEIPPGECCPICPTIPPTPSANRDTTQRPIWNPVTNSVDFGVEVDWSGK
DRHYGPRPQPDVIQGPPGPRGPPGLIGRPGLQGYPGSAGETGQPGSTGSAGPPGRSGPTG
SPGYVGAPGKQGRVGERGASGPPGPRGQSGIPGMPGSKGHRGFNGLDGSNGESGPPGIKG
EAGSPGGNGLPGPMGPRGLSGARGHNGSPGTVGSRGNDGRSGKDGTAGLPGRPGAPGFPG
RPGTKGESGERGSRGSDGTPGTRGEPGFQGSAGISGLPGKSGKDGSPGARGLQGLSGIPG
SPGGPGPIGVPGPTGTNGVPGSKGLSGESGKPGATGEPGPKGESGTPGSSGLPGPAGEEG
KRGLPGEAGSNGEKGVPGERGAPGVRGVPGLSGPLGEKGPAGENGPPGPVGSRGANGESG
RPGDAGIPGHRGLTGNPGSPGPIGKHGPQGLSGDRGPPGPGGSPGQRGSPGVMGFPGPRG
SDGQPGKDGAKGFAGGPGLQGLPGKPGVIGPPGVPGKTGAVGERGESGLQGFPGVQGLGG
NTGPPGENGKPGEPGPHGEIGSPGATGPKGEAGPAGEVGHMGSSGPTGPRGLPGDSGLEG
AKGSPGPPGLPGSMGSSGMQGMPGEKGSPGGKGPKGERGEVGPSGPDGTPGKDGAAGQQG
TMGLPGQPGGLGGRGESGPAGPPGPVGSRGLPGERGETGPKGPSGFPGPPGLDGHTGPKG
SDGSRGSTGNSGLPGPPGPSGSPGQLGLPGTKGVKGDRGSPGPAGISGFPGAPGPIGAIG
SAGSAGPPGSPGSLGKDGPPGPAGKTGSRGEIGLAGPKGEPGNPGDKGSPGESGPQGLSG
IPGPQGLVGTRGVVGLPGALGRPGPSGTRGPSGEDGKPGPAGGPGGRGPSGQAGPPGVTG
PAGQPGRDGNPGSDGPPGRSGGPGSKGNRGEPGPVGHQGSSGLPGPPGQPGSPGKQGDRG
SSGPSGSQGPPGPPGAAGRMGPQGPRGNKGEDGQPGRNGIKGHRGFPGVQGLPGSPGISG
ETGQAGNPGARGARGPPGSTGPPGKDGNNGYPGSIGPPGPRGSRGEAGPSGPPGIHGPAG
HPGPPGPPGVCCGTSSRDDGDMGVVIQESYYYGDQPGKAENAQGEEIIATLKSLNGRMDT
ILSPDGSQKSPARSCRDLKFCHPEFKSGQYWIDPNQGCKLDAIKVHCNMETGETCVSSNP
SIIPRKNWWTSKNIGRKKHVWFGESMDGGFYFSYGDDGIAEDTVEIQVGFLRLLYTRASQ
NVTYHCKNSIAYLDAEAGNVKKALRLMSWVDAELKAEGNSKFIYNVLEDGCTKHTGNWGK
TIFEYRTRKTLRLPIVDIAPMDIGAEDQEFGVDIGPVCFL
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagcattgtccatgtgtgttttttcctacttcaggtgataacacaggtgtcattc
acatcagctcaacagggtaccatatgcattcacgatgggaatgattatgaagatcaagaa
acctggaaacctagcgactgcgaaatctgcgtttgtgataatggaatcaccctctgtaat
gatatagaatgtgacaccctagactgccctgatgctgagataccccctggggaatgctgt
cctatatgtccaaccattcctccaacacccagcgctaatcgtgatacaacccaaagacct
atatggaatccagtaactaactctgttgattttggtgttgaagtggactggagtggcaag
gatagacattatggacctcgtcctcaaccagacgttattcagggtcctccaggacctaga
ggtccacctggcttaattggacgacctggtcttcagggttatcctggttcagctggtgag
actggacaacctggctctacaggttcagcaggacctccaggcagatcgggtccaactgga
tcacctggatatgttggtgcacctggaaaacaaggaagagtcggtgaacgtggagcatca
ggtcctccgggtcctcgtggccaatctggtatacctggaatgcctggaagtaaaggtcac
agaggtttcaatggccttgatgggtcgaatggtgaatctggtcctccaggaataaagggt
gaagctggctctcctgggggcaatggcttgcctggcccaatgggtcctcgaggtttgtcg
ggtgcgagagggcacaatggttcccccggaacagtgggtagccgtggtaatgatggtcga
tctggcaaagatggtacagctggtcttccaggacggcctggtgcacctggttttccaggt
cgtccaggaactaagggtgaatctggtgagcgaggttctcgtggttctgatggtactcca
ggcacaagaggtgaaccaggtttccagggctctgctgggatctcaggcctgcctggaaaa
tctggaaaagatgggtcacctggtgctcgaggtttacagggtctttctggtatacctggc
agccctggcggaccaggtccaattggtgttccaggcccaacaggtactaatggtgttcca
ggatccaaaggtctatcaggtgaatctggaaaacctggagcaacaggtgaacctggtcct
aagggtgaatccggaacacctggaagctcaggtcttcctggccccgctggtgaagaaggt
aaaagaggtttacccggtgaagcaggatcaaatggtgaaaagggtgttcctggcgagaga
ggagctccgggagtaagaggagtccctggtctaagtggaccactaggtgaaaagggtccg
gcaggagaaaatggtccaccgggtcccgtagggtccagaggggctaacggtgaatcaggt
cgtcctggagatgccggtatccctggccacagaggacttacaggaaaccctgggagccct
ggtccgattggtaaacatggaccacagggtctttctggagatcggggtcctccaggtcca
ggtggttcacctggacagagaggttcaccaggtgtgatgggtttccctggtccaaggggc
agtgatggacaacctggcaaagatggtgcgaaaggatttgcaggtggtcctggtctacag
ggtttacctggaaaacctggggtgattggacctccgggtgtgcctggcaaaactggcgca
gttggtgaaagaggagagtcaggtctgcaaggatttcctggtgttcagggtctgggtggt
aatacaggtcctcctggtgaaaatggcaaacccggtgagccgggaccccatggtgaaatt
ggttccccaggtgcaactggtccaaaaggagaggctggtccggcaggtgaggtcggacac
atgggttcttcagggcctacaggcccacgcggccttccaggtgacagtggattagaagga
gctaaagggtctcctgggcctccaggtcttcctggctcaatgggctcttcaggaatgcaa
ggtatgccaggtgaaaaaggtagtccaggtggcaaaggtcctaaaggtgaaagaggggag
gttggtcccagtggccctgatggtacaccaggcaaagatggtgccgcaggacagcaagga
actatgggtctaccaggtcaaccaggaggtctaggaggacggggcgagtctggtcctgct
ggtccgcctggccctgttggttctcgcggccttcctggtgaacgaggtgaaactggtcct
aaaggcccaagtggatttcctgggcctccaggtcttgatgggcacactggtcctaaaggc
tcagatggcagccgtggttcaacgggcaattctggcctgccaggtcctccaggtccaagt
ggttcacctggtcaactgggccttcctggaactaaaggtgtgaaaggtgatcgtggatca
ccaggtcctgctggtatttctggttttcctggtgctcctggtccaattggtgcaattgga
tcagcaggtagtgctggtcctcctggctctccaggttcccttggtaaagacggcccccct
ggtccagctggtaaaactggttcacgtggtgaaattggacttgctggtcccaaaggcgaa
ccaggtaaccccggcgataagggttcacctggtgaatctggtcctcagggtctttctggc
ataccaggccctcaaggtttggtaggaacacgtggcgtggtaggcttacctggtgcgctt
gggcgacctggcccttcaggtacaagaggtccatcaggtgaggatggcaaaccgggcccc
gctggtggcccaggtggacgaggtccttctggtcaagctggaccacctggcgtaactgga
ccagctggtcaaccaggcagagatggtaatccaggctctgatggtcctcctggccgaagt
ggaggccctggttctaagggtaatcgtggtgaacctggcccagtgggccaccagggttcc
tctggacttcctggacctccaggtcagcctggttcacctggaaaacaaggtgacagaggt
tcatcaggaccgtcaggttcacagggaccaccaggcccacctggggctgcgggacgtatg
ggcccacaaggcccacgtggcaataaaggtgaagatggacagcctggtagaaatggtatc
aagggtcatcgtggattccctggtgtacaaggtctgccaggatctcctggtatatctggg
gaaacaggtcaagccggaaatcctggagctcgaggcgcaagaggtccaccaggttcaact
ggccccccgggcaaagatggtaataatggttatcctggctccattggtccccctgggcca
cggggttcaagaggagaagctggccccagtggtcctcctggtattcatggtcctgctggt
catcctggcccccctggtcctcctggtgtctgttgtggaacatcatcacgtgacgatgga
gatatgggtgtagtgattcaggaaagttactattacggcgatcagcctggtaaagctgaa
aatgcacaaggggaagaaataatagctaccctgaaatctcttaacggccgaatggacaca
atcctgagcccagatggatcgcaaaagagtcctgcccgtagctgccgtgatctgaaattt
tgccatccagaattcaagagtggacaatactggattgatcctaatcaaggctgcaagttg
gatgccatcaaagtacattgcaacatggagactggagagacctgtgtgtcctccaatccc
agcatcattccacggaagaactggtggacaagcaaaaacattggcagaaagaagcatgtg
tggtttggcgagtccatggatggtggtttttattttagctatggtgatgacgggatagcg
gaagatactgttgaaattcaagtaggattcctgcgactgctttacactcgagcatctcag
aatgtcacctaccactgtaagaacagtattgcctacctggatgctgaggccggaaatgtg
aagaaagccttgaggctgatgagttgggttgatgcagagctcaaagctgaaggaaacagc
aaatttatatacaatgtccttgaagatggttgtactaagcacacaggaaactggggcaag
acaatatttgaatatagaacacggaagactcttcggctgcccattgtggacattgcacca
atggatattggtgctgaggaccaggaatttggtgttgacattggacctgtctgcttcttg
taa
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