Scyliorhinus canicula (smaller spotted catshark): 119962682
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Entry
119962682 CDS
T11175
Symbol
lman1
Name
(RefSeq) protein ERGIC-53 isoform X1
KO
K10080
lectin, mannose-binding 1
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
119962682 (lman1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
scau04131
]
119962682 (lman1)
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
scau04091
]
119962682 (lman1)
Membrane trafficking [BR:
scau04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
ER-Golgi intermediate compartment (ERGIC) proteins
119962682 (lman1)
Lectins [BR:
scau04091
]
L-type lectins
119962682 (lman1)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Lectin_leg-like
Lectin_L-type_dom
Flagellar_rod
Lectin_legB
Golgin_A5
GCN5L1
IMD
DUF5344
Motif
Other DBs
NCBI-GeneID:
119962682
NCBI-ProteinID:
XP_038646534
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All DBs
Position
3:complement(58840187..58895480)
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AA seq
495 aa
AA seq
DB search
MAALLTVTGGLLLLHLLQAIGGSGVSAELPARRFEYKYSFKGPHLVHSDGSIPFWTHTGN
AIPSADQIRITPSLKSQKGSVWTKSRFSFENWEIEVTFRVTGRGRVGADGLAIWYTVDQG
LDGPVFGAADSWNGVGIFFDSFDNDGKKNNPVVLVVGNNGQYLYDHQNDGATQALGSCLR
DFRNKPYPVRARIIYYRKTLTVMLHNGFTPNNDDYELCARVENMVLPSEGYFGISAATGG
LADDHDVLSFLTFRLLEPGKPAEEPADSTIPQEEKEKYREEYENFQQALDKKKEEFQKDH
PDAQGEAADLFETVNERELRQIFEGQNRIHLEIKQLNRQLSMILDEQRRYVSLVTEEMSK
RGTNTAPQAGQLPQGELDNIVRYQQEVLRHVGELKNTVTNALNQAAQLPGGATGGYETIQ
HFNDIKENLHTVKRDLASLVQRNINIEKPKCPELPPFPSCLSTTHFFMFVAVQTVLFIGY
IMYRSQQEAAAKKFF
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctgctaacggttaccggtggattactcctcctgcatctactccaagccatc
ggcggcagcggcgtaagcgctgagctgcccgcccgccgcttcgagtacaagtacagcttc
aaggggccgcacctggtgcacagcgatggcagtatccccttctggacgcacacgggcaat
gcaatcccgagtgccgatcaaatccgtataacgccatcactgaaaagtcagaagggatcg
gtttggacaaaaagtagatttagctttgaaaactgggaaattgaagttactttccgtgtg
actgggagaggacgggtcggagccgacgggctggcaatctggtacacagtggatcaagga
ttggatggcccagtttttggagcagctgattcatggaatggtgttggtattttctttgac
tcctttgataatgatggaaagaaaaataatccggtagtacttgtcgttggaaacaatggg
caatatctttatgatcatcaaaacgatggtgcaacacaagctttggggtcttgcctgaga
gactttcggaacaagccttaccctgtgagagctaggataatctactacagaaaaacactg
actgttatgctacataatggctttactccgaataatgacgattatgagctttgtgccaga
gtagaaaatatggttctgccatctgagggttattttggaatctctgcagcaactggaggt
cttgcagatgaccacgatgtcttgtcttttctgacattccgacttttggaacctggcaaa
ccggcggaggagcctgctgattcaacaattccccaagaagaaaaagagaaatatcgagag
gagtatgaaaatttccaacaggcacttgataaaaagaaagaagagtttcaaaaagatcac
cctgatgcacaaggagaagcagctgatttgtttgaaacagtgaatgagcgggaattgaga
caaatctttgaaggtcaaaaccgtatccaccttgaaattaaacagttgaacagacaactc
agcatgattctggatgagcaaaggaggtatgtctccctagtgacagaggagatgtcaaag
agggggactaatactgcaccacaagcagggcagctccctcaaggagagcttgataatatt
gtgcgataccagcaagaagtgcttaggcatgttggtgaattgaagaataccgtaactaat
gccctgaatcaagcagctcagcttccaggtggtgcaactggtggttatgaaacaatccaa
catttcaatgacataaaagaaaaccttcatactgttaaaagagatcttgcatcattagta
cagagaaatataaacattgaaaaacctaaatgtccagaattgcctccgttcccatcatgt
ttgtctacaactcatttcttcatgtttgtggcagttcaaaccgtattgtttattggttat
atcatgtatcggagccagcaagaagcagctgcaaagaagttcttttga
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