Scyliorhinus canicula (smaller spotted catshark): 119962847
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Entry
119962847 CDS
T11175
Symbol
si:dkey-250l23.4
Name
(RefSeq) E3 ubiquitin-protein ligase RNF180 isoform X1
KO
K15708
E3 ubiquitin-protein ligase RNF180 [EC:
2.3.2.27
]
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
scau04121
]
119962847 (si:dkey-250l23.4)
Enzymes [BR:
scau01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
119962847 (si:dkey-250l23.4)
Ubiquitin system [BR:
scau04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
119962847 (si:dkey-250l23.4)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNF180_C
zf-C3HC4_3
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_2
zf-RING_5
RING_XB3-XBAT31
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
119962847
NCBI-ProteinID:
XP_038646938
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All DBs
Position
3:103899453..104071055
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AA seq
604 aa
AA seq
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MDVHIMEGFLRCRKCRRFVLDAGSLSSSHGVQPSKSQNAAEESIGQNNCMVWHVNLEALP
SWITKEIEKSWWTIGKLNCLHCGARLGDFNFVSNAKCPCGQPVTVHICKRRTDYETPHLI
RIIESTKVKSLQKVQYLCKLETVENMDHGIENIMSHHRHKEFLHHSRKMDRERITEALCL
EARSRSRETVEVDSNEFNFKAAYQQPFSSASQPLRDRCAMMGFHKKSHSLDFSSTNAKDA
SVSFSGIHGLCPRSSSCGIIMHHIGEIASPRPFPLGEDANLQLPVSEESSSSAYSRPSIR
ESDFVSCPQAFNNNLVEEVQEDLDPGPSVLRHCRNKVASVPGTIRGWSPDSSTEASDTEE
WEEGRGAGTSNPSNDSVPCVPLFSALGERTLSKRQRNKLKSLKRKQRRRERWHQSKLKEQ
KQTSSSNLTTSGDEDEIKWKKEGYICAVCLDIFFSPYMCYPCHHIFCEPCLRTLAKDNPT
NTPCPLCRTAITRVFFQTELNNTMKHLFSEEYLARRQSFQKASCAKWPLPSCRRLFRILG
GFGRHSDPVARRQFPHGAYRLDFEDDNRGWRFDMDMVIIYIYSVNWVIGFIIFCFLCYFF
FPSF
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atggatgttcacataatggaaggatttctacgatgccggaaatgccgaagatttgtactg
gatgctggtagtttgtcttcttcccatggggtgcagccttccaaatcacagaatgctgct
gaggaatctatcggccaaaacaactgcatggtttggcatgtgaatttagaagctcttcct
tcttggataacaaaagaaatagagaagtcatggtggacaattgggaagctgaactgcctg
cactgtggggcccgcctgggggattttaactttgtcagcaatgctaaatgcccttgtggg
caaccagtgactgtacatatttgtaagagacgtactgactatgaaacaccacatttaatc
agaatcattgaatctacaaaggtgaaatctctgcagaaagtgcagtacttgtgtaaatta
gaaactgtggagaacatggatcatgggatagaaaacatcatgtcccaccacaggcataaa
gaatttttacaccattcaagaaagatggatcgtgaaagaataactgaagcgctttgcctc
gaggcaagatcacgcagtcgagaaacggtagaagttgacagcaatgaatttaacttcaaa
gcagcttatcagcagccattctcttctgcttcacagcctctgagagacagatgtgcaatg
atgggttttcataaaaagtctcacagtctggattttagcagcacaaacgcaaaggatgca
tctgttagtttttctggaatacatggtttgtgcccgcgatcttcatcttgtggaattata
atgcatcatattggtgagattgctagtcccagaccatttccactgggagaagatgctaac
ctgcagctacctgtatctgaagaatccagcagttctgcctattcgcgcccctccattcga
gagtctgattttgtgtcatgtcctcaagcattcaataataaccttgtggaagaagtgcaa
gaggatttggatcctgggccatctgtgctaagacactgcaggaacaaagttgccagtgtt
cctggcactatcagaggttggtcacctgactcgagtactgaagcaagtgacacagaggaa
tgggaggagggacgtggtgcaggcacaagcaatccttctaacgattcagtcccgtgcgtt
cccttattctcagctctaggtgaaagaacactgagcaaaaggcagagaaacaaacttaaa
agtttgaaaagaaaacaacggagacgggagcgttggcatcagagcaagttgaaggagcag
aaacagacttccagttcaaatctgaccacttcaggtgatgaagatgaaatcaagtggaag
aaggaaggctacatttgtgctgtttgtctggatatatttttcagtccctatatgtgttat
ccttgtcatcacatcttttgtgagccctgtcttcggactcttgcaaaggacaaccctacg
aatacaccatgtcctttgtgtcgcaccgccatcacaagagtcttttttcaaacagagttg
aataatacgatgaaacatttattctctgaggagtatttagccagaagacaaagctttcaa
aaagcaagctgtgcaaagtggccattacctagctgcaggagattgttcagaatcttggga
ggttttggaagacattccgatcccgttgcaagaagacagttccctcatggtgcctacaga
ctggattttgaggatgacaatcgtggctggagatttgatatggacatggttatcatttat
atctattctgttaactgggtcattggattcataattttttgctttctctgctactttttc
tttccatctttttaa
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