Scyliorhinus canicula (smaller spotted catshark): 119962911
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Entry
119962911 CDS
T11175
Symbol
pdgfra
Name
(RefSeq) platelet-derived growth factor receptor alpha
KO
K04363
platelet-derived growth factor receptor alpha [EC:
2.7.10.1
]
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04010
MAPK signaling pathway
scau04020
Calcium signaling pathway
scau04144
Endocytosis
scau04510
Focal adhesion
scau04540
Gap junction
scau04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
119962911 (pdgfra)
04020 Calcium signaling pathway
119962911 (pdgfra)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
119962911 (pdgfra)
09144 Cellular community - eukaryotes
04510 Focal adhesion
119962911 (pdgfra)
04540 Gap junction
119962911 (pdgfra)
09142 Cell motility
04810 Regulation of actin cytoskeleton
119962911 (pdgfra)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
scau01001
]
119962911 (pdgfra)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
scau04090
]
119962911 (pdgfra)
Enzymes [BR:
scau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
119962911 (pdgfra)
Protein kinases [BR:
scau01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
119962911 (pdgfra)
CD molecules [BR:
scau04090
]
Proteins
119962911 (pdgfra)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
ig
VEGFR1-3_N_Ig-like
Ig_2
VEGFR-1-like_Ig-like
V-set
C1-set
Ig_4
Adeno_E3_CR1
Motif
Other DBs
NCBI-GeneID:
119962911
NCBI-ProteinID:
XP_038647097
LinkDB
All DBs
Position
3:complement(120244714..120313434)
Genome browser
AA seq
1095 aa
AA seq
DB search
MGIFWKIFLIMDCLFLEVFKGPQLANCQTLPDVYPNKVELRVALHTSFSLKCSGENEVDW
ELPFDEVHEENISSKDENNNSGNFVKTLEIFNATGIYTGLYTCYYPALQLDYEIEGRDIY
VFVPDPNYPFIPPAHFENVVVAAEGADAEIPCRVSDPDVQVTLKSIDTQNMISATYHNKE
GFSGLFKEGTYICIATINGVEHRSIEYIVNRFKVAKILTVEIEAEKTVVKVGEPIVVTCL
VMDNEVVDIDWNYPGKDKGTEAEEIITELRQPSFKINKTLKIEKATMDDAGVYGCSVTHA
TQDTMNLKQVHIHVTEKGFIHLHPNYGTKEFADLHEVKQFVVNIEAYPKPNVWWLKNNIT
LLEDNNEVMINTVKTQETRYQSNLTLIRAKKQDSGAYTIIVENEDNSTTYTFYLQVKVPA
KIINLVDVHHGSASGQIVSCLADGTPSPEVEWLICTDLKKCANDSMLWNVLHNNSSDISI
ETHQTKKNTVESKLTFQKVDNTVAVRCIAKNELAVVAREVKLVAHNLHSELKVAAAVLVL
LVIVIISLIVLIVVWKQKPRYEIRWRVIESISPDGHEYIYVDPMQLPYDTRWEFPRDGLV
LGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKSTARSSEKQALMSELKIMTHLGPH
LNIVNLLGACTKAGPIYIITEYCFYGDLVNYLHKNRDSFINRYSDKCKKEVDIFGINPAD
ESTRSYVILSFENNGDYMDMKQAESTQYVPMLERKGSSKYTDIQQYMYDHPPSQKNKSLT
ETTEAWNPLLDDNSDGLSFMDLISFTFQVAQGMEFLASKNCVHRDLAARNVLLAQGKIVK
ICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTSLSDVWSYGILLWEIFSLGG
TPYPGMMVDSNFYNKIKSGYRMTKPEHASSDVYDLMVKCWNSEPEKRPSFTRLAEIVGGL
LPENYTKSFKQMNDDFLKSDHPAVARMRTESSESYVGVTHTNEDKKKDRESGFDEQRLSA
DSGYIIPLPDIDPITDSEPGSSRNRHSSQTSEESAIETGSSSSTFIKREDETIEDMEMMD
DVAIDPSDLVEDSFL
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atgggcatattctggaaaatattcctgataatggactgtctcttcttggaagtcttcaaa
gggccccaactggccaactgccaaacgttaccagatgtttaccccaacaaagttgaatta
agagttgctctccatacatcattcagcctaaagtgctctggggagaatgaagtggattgg
gaattgccgtttgatgaagttcatgaggagaatatcagtagtaaagacgaaaacaacaac
agcggaaactttgtgaaaacacttgagatctttaatgcaacaggaatctacactggcctg
tatacctgctattaccctgcactccagcttgattatgagattgagggacgagatatctat
gtttttgttccagatcccaactatccattcatcccgccagcgcattttgaaaatgtagta
gtggcggcagagggtgcggatgcagaaatcccatgtcgtgtatctgatccagatgtccaa
gtcactctgaagagtattgatactcagaacatgatctctgccacctatcataataaagaa
ggattcagtggtctgttcaaagaggggacgtatatctgcattgcaacgatcaatggtgtg
gagcacagatcaatagaatacattgttaatagatttaaagtggcaaagatccttacagtt
gaaatagaagctgagaaaacagtagtgaaagtgggtgaacccatcgtggtgacttgtcta
gtaatggataatgaagtagtggatatagactggaattatcctggaaaagataagggaact
gaggcagaggaaattattacagaattaagacaaccaagcttcaaaataaacaagactctg
aaaattgagaaagccacaatggacgatgctggagtctatggatgttctgtgacacatgca
actcaggatactatgaatctgaaacaggttcacatccatgttactgagaaaggatttatc
catttgcatcccaactatggaacaaaagagtttgcagatttacatgaagtcaagcagttt
gtggtcaacattgaggcttacccaaaacccaatgtatggtggctgaaaaacaatatcacc
ctgcttgaggataacaacgaggtgatgatcaacacagtaaaaacccaggaaactaggtat
caaagtaatttaaccctgattcgtgcaaagaaacaagacagcggggcttacaccatcatt
gttgaaaatgaagacaatagtaccacttatacattctacctacaggtgaaagtgccagca
aaaatcatcaatcttgttgatgtccatcatggctctgcgagtggccagatagtttcatgt
ttggcggatgggacgcccagcccagaggtcgaatggctcatctgtacagatctaaaaaaa
tgtgcaaatgactcgatgctctggaatgttctccacaacaattcgagtgatatcagtatt
gaaacccatcagacaaagaaaaatactgtggaaagcaagctgacctttcaaaaagttgat
aacacagtggctgtgagatgcattgcaaagaatgagcttgcagtcgttgcacgtgaagtc
aaactggtggctcacaacctccattctgaactgaaggtggctgcagcagtcttggtgttg
ttggttattgtgatcatttctctgatagtgctcattgtagtttggaaacagaaaccaaga
tatgagataagatggagagtcattgaatcaataagtccagatgggcacgaatatatttat
gttgatcccatgcaacttccctatgatacacgatgggaatttccgagggatggacttgtc
cttggtcgaattcttgggtctggagcctttggaaaggtagttgaaggaactgcatatggc
ttaagtcgctcacagcctgttatgaaagtcgctgtaaagatgttgaagtctacagcccga
tccagtgagaagcaggccctgatgtcagagctgaagataatgactcacctgggcccacat
ttaaacattgtcaacttgctaggagcatgtaccaaagcaggccctatctacattatcact
gaatactgtttctacggcgatctggtaaactacctgcataagaacagggatagctttata
aatcggtactctgacaaatgcaaaaaggaagtggacatttttggtataaaccctgctgat
gaaagcacaagaagttacgtgatcttgtcctttgagaacaatggggactacatggatatg
aagcaggctgaaagcacccagtatgtgccaatgttggaaaggaaaggcagttccaaatac
acagacattcagcagtacatgtatgaccacccaccatcgcagaaaaataagtccttgaca
gagacgactgaagcctggaatcctctcttagatgacaactcagacggtctctctttcatg
gatcttatcagcttcaccttccaagttgcacaaggcatggagtttctggcttctaaaaat
tgtgtacatcgtgatctggcagctcggaatgttctcctagcacaaggaaagattgttaag
atctgtgactttggtctggcacgggacatcatgcatgactcgaactatgtctcgaaaggc
agtactttcctaccagtgaaatggatggctcctgaaagcatatttgacaacctatacact
tcgctaagtgatgtctggtcttatggcattcttctgtgggaaatattctccttgggtggc
acaccatatccaggaatgatggtggattccaacttttacaacaagataaagagtggatac
aggatgaccaagccagaacatgcttcttctgatgtctatgacctgatggtgaagtgttgg
aatagtgagcctgagaagcggccttcctttactcgtctggctgaaattgttggcggtttg
ttaccagagaactacacaaagagcttcaaacagatgaacgatgactttctgaagagtgac
caccctgctgttgcccgcatgcgtacagaatccagtgagtcgtacgttggagttacccac
accaatgaagataaaaagaaagatcgggaaagtggatttgatgagcaaaggctgagtgct
gacagtggatatatcatccctctgcctgacattgacccgatcacagacagcgaacctggt
tcttcaagaaaccggcacagttcccagacatccgaagaaagtgcaatcgagacgggctcc
agcagctcgacttttataaagcgtgaggacgaaaccatagaagacatggaaatgatggat
gacgtagcaatcgatccctcagacctggtggaggacagcttcctgtaa
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