Scyliorhinus canicula (smaller spotted catshark): 119963111
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Entry
119963111 CDS
T11175
Symbol
nup54
Name
(RefSeq) nucleoporin p54 isoform X1
KO
K14308
nuclear pore complex protein Nup54
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119963111 (nup54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scau03019
]
119963111 (nup54)
Messenger RNA biogenesis [BR:
scau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
119963111 (nup54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
ToxA_N
Motif
Other DBs
NCBI-GeneID:
119963111
NCBI-ProteinID:
XP_038647641
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All DBs
Position
3:169335140..169417383
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AA seq
525 aa
AA seq
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MAFNLGGGTSGTTGFSFGSFCAKTTAQPSFGFGTTTTTASSGFGGFGSFGTTNTTASGQT
AGFPFGASTGLFQNTQNKGFGFGGGFGAGTGTGLTTGLVAGSTFGGFGGFGTQQPQQTGG
LFGQALQPPTQSAQLINTASALSAPTLLGDERDAILAKWNQLQAFWGTGKGYFHNNLAPV
EFTQENPFCRFKTVGFSCIPSNKDEDGLVALAFNKKEADIRNQQQLIVESLHKILGGLQQ
IMVNVEGIRALPDDQTEMVIYVVERFPNGNSRRVSATNLYSSLEQANVKTLLMQLGVIVA
LPRTELSPAQMKQLLQNPPAGVDPIIWEQAKVDNPDPEKLIPVPMVGFKELLRRLKFQEQ
MTKQHQSRLDIISEDVNELQKNQATTVAKIAQYKRKLMDQAHKVLQVLIKQEIQRKAGYA
IQAEEEQLRVQLDTIQSELNAPTQFKGRLNELMSQIRMQNHVGAVRSEERYSVDGDLLGE
IKQHLKLQQEGLSHLTSVLKEDLEDVKLIEQGLNESVHIRRDLFS
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcaatctgggcggtgggacctcaggaaccactggattttcttttggttctttt
tgtgccaaaaccacagcacagcccagttttggtttcggaactaccaccacaacagcttcc
tcaggatttggaggttttggctcatttggaaccactaacacgactgcaagtggacaaacg
gcaggatttccttttggggcatcgacaggtcttttccagaatacacagaataaaggcttt
gggtttggtggtggatttggcgcaggtactggcacaggtctaacaactggcttagtcgcc
ggttccacatttggaggatttggtggctttggcactcagcagccacagcaaacaggaggg
ctttttgggcaggcattacagcctccgacgcagtcagctcaactgatcaacacagcaagt
gccctttctgcaccaactctactgggggatgaacgagatgctatattggccaaatggaac
cagctgcaggcgttctggggaactggaaaaggttacttccataataacttggctcccgtt
gagttcactcaagaaaaccctttctgccgttttaagaccgttggtttcagctgcatacct
agtaataaagatgaggatggtctggtagccttggcttttaacaaaaaagaggcagacatt
cgaaaccagcagcaactgatcgtggaatcattgcacaaaattcttggagggttgcagcaa
atcatggtgaatgttgaaggaatccgagcacttccagatgatcaaacagaaatggtgatc
tatgttgttgaacgttttccaaatgggaattccagaagggtttcagcgacaaacctctac
agttcactggagcaagctaatgtgaagactcttctgatgcagttaggagtgattgttgct
ctgcccaggacagaactttctccagctcaaatgaaacaactgctgcagaaccctcctgcc
ggtgttgatccaataatttgggagcaggctaaagttgacaatcctgaccctgaaaaactg
ataccagtgcccatggttggttttaaggaactgctgaggaggctcaagtttcaggaacag
atgacgaaacagcatcaaagcagactggatattatatctgaggatgtgaatgaactacag
aagaaccaggccacaactgtagcaaagatagctcagtacaagagaaaactgatggaccaa
gctcataaagtcttgcaggtgttaataaagcaagagatccagaggaaagctggttatgcg
attcaagcagaagaagagcagcttcgagttcagttagacactattcagagtgaactaaat
gcaccaacccagtttaagggccgtcttaacgagctgatgtctcagataagaatgcagaat
catgttggagctgtcagatcagaggagagatacagtgttgatggggatctcttgggagaa
atcaaacagcacctgaagttgcagcaggaagggctgagtcatttgaccagtgtcctgaag
gaggatttggaggatgtgaagctaattgaacagggccttaatgagagtgttcatattcgc
cgtgacctttttagttga
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