Scyliorhinus canicula (smaller spotted catshark): 119963165
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Entry
119963165 CDS
T11175
Symbol
synpo2b
Name
(RefSeq) synaptopodin-2 isoform X1
KO
K24066
synaptopodin-2
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
119963165 (synpo2b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
scau04990
]
119963165 (synpo2b)
Domain-containing proteins not elsewhere classified [BR:
scau04990
]
PDZ domain-containing proteins
Other PDZ domain-containing proteins
119963165 (synpo2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
Calsarcin
PDZ_6
Motif
Other DBs
NCBI-GeneID:
119963165
NCBI-ProteinID:
XP_038647780
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Position
3:complement(181727955..181949439)
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AA seq
1304 aa
AA seq
DB search
MDKTAESCNTRRLGVLVHKTLKASTLVHREASWNVGPYSRWLEYKSRDVLLQLYKVRKKS
KACRAGLCEGDEFISINSKPCSELTHSEAMQLIDGTSETLQILIKRPISEKTDQPEYEVY
EGTKRQETVETTLQVSGSKASCKQALPFELYISESQDEAYYGETESDTDITGRKEEKQRQ
NNSRFFFKECTSSGESLKDSSCKEKREPQPHMAMVEFQLSLTQGKLGDPETTAVTIIGAE
KINSVARDPTTLHESIQRTESAAPEPDGNVAIQTASTTISLQSKSDKKVKLVESELQGTE
GDSYQCRVELPLDSSDREQSGREASTSEVGSGCADSLAEEGQSKIRSTPPFSIGISSEGT
EHGSEGTRSGKDLARTHKHRARQAKIRRSESLSEKQVKEAKSKCKSIALLLTAAPTPSSK
GALMFKKRRQRAKKYTLVSYGTGEFDPDDDQEDSIEFTLVPTSDSDLDEDFCADVSTAQV
VTFDWDTGLVEVEKKERTEDEMQRLPDTKGKGALLFAKRRQRIDQYTAEQEEMRRAGVTE
AISTHTVNTESYYQTSKGSLNDSSHTMQNNATENYIDVSKLHGIENVSGVKGRSEMVIQN
SKSAETNRTGATNRTATPFPGVQNRAAAPFSPTRNVPSSLSDLPPPPTYSSISPPLDNIY
RIVSPPLATMAQPAIWSPTGIAGEQIASRDERICVPAIKTGILQDARKRNTTKPMFTFVD
RPKVAPNPELLSMVKGKTDRRRGVDQPGGGFESGPEEDYLSLGAEASNFLQTPAIKQKIP
PPVAPKPSVKSPPSVTTPTLPPLPPAEVSNPQAPVYLSKSTNQVPVKSHSVQPVNALYQS
QGATNQYVSSAGPRSITSTHSYPSKTPPTTPIANSAPAGGMGPAYEMPALKGKGAQLFAR
RRSRMEKYIVDSSTVKARQARPSSPTPSMPASWKYSSNIRAPPPLAYNPIHSPSYPPGIL
KAQSSSSSKSNKGAKKGKGAKKPLNALDVMKHQPYQLNSSLFTFSSTPDAKAPLATSSSL
SKQSITSDPVPPQPVNATYPVSKNVSSVPTGPSFNQANTASAEEEYVYPSGKNTFVAQSY
ASYPKQEPSALSVAMAPRPKFSAKKVGVTAQVQSRGFQPVQAPAKQHGYPHGLSGTQALR
QPATISSGRPTFQSVKTSLKKLTPWDAASQSAVGSVEEAFFSRNLQESIAKNIVSAARRK
TLPEPPEEWKARVAYVPPVLSSYSSIATFQVRKPSSITPSIKTIATIPASAIQESSMYKQ
PLKYQQSLTDSDLSIGAYSEHKTLGKQVADPNYNPYPQGWKKQS
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggacaaaactgcagaaagctgcaacacaagaagacttggggtacttgtgcataaaaca
ctgaaagctagcacactggtgcatcgggaagcctcctggaatgttggtccttattcaagg
tggttggagtataagagcagggacgtcttgctgcaactatacaaggtgcggaagaagagt
aaagcctgcagagctggattatgcgagggagatgaatttatctcgatcaacagtaaacct
tgttcagaattaacccattccgaagccatgcagctcatagatgggaccagtgaaactctg
caaattcttattaaaaggcccatcagcgagaaaactgatcagccagaatatgaagtatat
gaaggaacaaagcgacaggaaacagtggaaaccacattacaagttagcggcagcaaagca
tcttgcaaacaggccctcccttttgaactttacatctctgagtctcaggacgaggcttac
tatggagagacggaaagtgacacagatattacagggaggaaagaagaaaagcagaggcag
aacaactcgagatttttttttaaagaatgcaccagctctggagaatcactgaaggactct
agctgtaaagagaagagagaaccccaaccccatatggccatggtagaattccagttgtcc
cttactcaagggaagcttggcgatccagagacaactgccgtaaccatcattggggcagaa
aaaatcaactctgtagccagagatccaactacactgcatgagagtatccagagaactgaa
tcagcagcaccagaacctgatggaaatgttgcaatccagactgcctcaactactatatca
ctgcagagcaagagtgacaaaaaggtcaaactggtcgaaagtgagctacaaggaacagaa
ggggattcatatcagtgcagggtggagctgcctttggattcctctgacagggagcagagt
ggaagggaagcctccacgtctgaagttggcagtgggtgtgctgactctctggctgaagag
ggacagtcgaaaatacgtagcacgccccctttctccattggaatttcatcagaaggaaca
gagcacggatcagaagggacacgctctgggaaagatttggcgagaacccacaaacacagg
gctagacaagccaagatccgccggagcgaaagcctgtcagaaaaacaggttaaagaagcc
aagtcaaagtgtaaaagcattgcattgctgttgacagcagctcctacgcccagctccaag
ggggcgttaatgtttaagaagcgtcgccagagagcaaaaaagtatactttggtcagctac
ggcactggggagtttgatcctgacgacgatcaagaggactccatagaattcactctggtg
ccaaccagtgactctgatcttgacgaggacttttgtgccgatgtcagcactgcccaggtt
gtgacgttcgattgggatacaggtttagtggaagtcgaaaagaaggagaggacagaggac
gaaatgcagagattgccagataccaagggcaaaggggccttattgtttgccaagaggagg
cagaggattgatcagtatacagctgaacaggaggaaatgaggagagctggagttactgaa
gctatctctactcacactgtaaacacagaaagttattaccaaacatcaaaaggcagttta
aatgattcatcacacacaatgcaaaataatgccactgaaaattacattgatgtaagtaag
ttacatggaattgaaaatgtaagtggagtgaaagggagatctgaaatggttatccagaac
tcgaagtcagctgaaaccaataggacaggtgcgacgaacagaacagcgacaccatttcct
ggtgtacaaaatcgagctgccgctcctttctctccgacaagaaatgtgccaagttccctg
tcagatttacctcccccacccacctactcttccatcagcccaccacttgacaatatctac
cgcattgtgtctcctcctttggctaccatggctcaaccagccatttggtcaccaacagga
attgcaggggagcagatagcatccagagatgagagaatctgtgtaccagcaataaaaact
ggtatcttacaagatgcaagaaaacggaacactacaaagcccatgttcactttcgttgac
cgtcctaaggtagctccaaatccagaactcctgtcaatggtcaaaggtaagacagacaga
cgtagaggagtagatcagcctggtggaggttttgagtcaggacctgaagaggattatctt
agtttaggtgccgaagcatcaaactttttacagaccccagcaataaagcagaagatacct
cctccagttgcgccaaagccatctgttaagagccctccttctgtgacaaccccaacgtta
cctccattgccacctgcagaagtatccaatcctcaagctccagtctatctttctaaaagc
actaatcaggtgccagtaaaatcacattcagttcaacctgtaaatgcattgtatcagtcc
cagggtgctaccaaccagtatgtgtcttcagcaggaccccggtcaataacatcaacacat
tcatatccttcaaaaacaccacccacaactcccatagcaaattctgcaccagctggaggt
atgggtccagcctatgagatgccagctttgaaaggtaaaggagctcagttatttgcaagg
cgacggtctcgaatggagaaatatatagtagactcatcaacagtcaaagccagacaagca
cggccatcatcccccaccccctccatgccagcatcttggaagtattcatctaatataaga
gcacctccccctttggcttacaaccctattcattctccatcttatcctcctggcattttg
aaagcacaatcctcatcttcatctaagtcaaataaaggtgccaaaaaaggtaaaggcgct
aaaaaacctctcaatgctttggatgtcatgaagcaccaaccatatcagcttaattcatct
ttgttcactttttcatccactcctgatgctaaagcacctctagccacaagctcatcactt
tctaagcaatcaataacgtctgatcctgttccacctcaaccagttaatgctacctatcct
gtttctaagaatgtctcatctgtgccaacaggaccatctttcaatcaagctaatacagct
tctgctgaagaggaatatgtctatccttctggaaagaatacctttgtagcccagagttat
gcatcatacccaaagcaagaaccatcagctctgtcagttgccatggcaccaagaccaaag
ttttcagcaaagaaagttggagtcacagcacaggtgcagtcaagaggctttcaacccgta
caggcaccagcaaaacagcatggctatcctcatgggctttcgggaacacaagcattgcga
cagccagcaaccatttcatcaggaaggccaaccttccagtcagttaaaacatcattgaaa
aagttaaccccgtgggatgctgcatcgcagtctgctgttggttcagtagaggaagcattt
ttcagcagaaatttacaggagtcaatagcaaagaacattgtttcagcagcccgtcgaaag
acattgcctgagcctccggaggaatggaaggcacgagtagcctatgtccccccagtttta
agcagttattcttctattgccactttccaggtcagaaaaccatctagcataacaccctca
atcaaaacaatagcaaccattccagcatctgccatccaagagagttcaatgtataaacag
ccattaaagtatcagcaatcactgaccgactctgacctgtccattggggcatactctgag
cacaaaactttgggaaagcaagtagcggatccaaattataacccttatccacagggctgg
aaaaagcaaagttga
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