Scyliorhinus canicula (smaller spotted catshark): 119963197
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Entry
119963197 CDS
T11175
Symbol
lsm6
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm6 isoform X1
KO
K12625
U6 snRNA-associated Sm-like protein LSm6
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03018
RNA degradation
scau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119963197 (lsm6)
09123 Folding, sorting and degradation
03018 RNA degradation
119963197 (lsm6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scau03019
]
119963197 (lsm6)
03041 Spliceosome [BR:
scau03041
]
119963197 (lsm6)
Messenger RNA biogenesis [BR:
scau03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119963197 (lsm6)
mRNA degradation factors
5'-3' decay
Lsm complex
119963197 (lsm6)
Spliceosome [BR:
scau03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
119963197 (lsm6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
119963197
NCBI-ProteinID:
XP_038647866
LinkDB
All DBs
Position
3:193548475..193557831
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AA seq
92 aa
AA seq
DB search
MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY
GDAFIRGNNEVDNGYDVSMKTQSFPKASIGLF
NT seq
279 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcgaaagcaaacacccagcgattttctaaaacagatcatagggagaccagtg
gtggtcaaactgaactctggagtggattaccgaggtgttttggcttgtctggatgggtat
atgaatatagcattggaacagacagaagaatatgtaaatggtcagcttaagaacaagtac
ggagatgcatttattcgaggcaacaatgaagtggataatggctatgatgtatctatgaaa
acacaaagcttccccaaagcaagcataggcctgttttga
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integrated database retrieval system
