Scyliorhinus canicula (smaller spotted catshark): 119963418
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Entry
119963418 CDS
T11175
Symbol
pcdh18a
Name
(RefSeq) protocadherin-18a
KO
K16499
protocadherin delta 2
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
scau04515
]
119963418 (pcdh18a)
Cell adhesion molecules [BR:
scau04515
]
Cadherins
Protocadherins
119963418 (pcdh18a)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Psg1
Ly49
Motif
Other DBs
NCBI-GeneID:
119963418
NCBI-ProteinID:
XP_038648436
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Position
3:245199480..245207762
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AA seq
1119 aa
AA seq
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MARLRAFLLLLLLSGWAAERTAGITAKYTVYEEQPAGTVIGRLSETLAGQLHPSARRFRL
MQRLNASLLRVREEDGEVSVGGRLDRERLCRRAAPCRLAFDVITLPTEQLQLIQVEVEVL
DINDNPPRFPRARIPLEISESAAVGARFPLDGALDPDLGENALHGYSLSAEPHFALEVGS
RADGARYAELRLARELDREHQARYELRLTAWDRGQPARSGSSLLQISVADSNDNSPAFER
PAYSLRLPEDTRAGSLLLDLNATDPDEGSNGRVRYSFGSHVSAQVVDTFRIEADSGRLLL
LRPLDFELSQSYEIDVRAQDLGPNSVPAHCKIVVRVLDVNDNAPELAVTLVPLGGDVAAV
SEGAPPRTLVAVVRVQDRDSGPNGQVACTLQGAGHFSIQRTGEKNYVIQTNQTLDRERVA
QYRLAVIAQDLGAPSLTTVQYLTVHIGDENDNAPQFQRSSYQLSLLENNSPGVFLTLMTA
TDADSADNSRVTYTILDSSVAGSSITTYLTIDPSIGAIYALRAFDREEISSISFTVQARD
GGTPQLATNTTVLLTILDQNDNPPAILKPDLHNGSAEVTIPTNAGPKYLATTIAAIDKDS
GVNAEFTCSILDGNQNGMFIVDPRTCDVYTNDSFTLDQEKHWDLVVAVQDKGSPSLSTVA
TLKVMLEQKETPQHTEQSTLDDSMIIIISLGVICAVLLIIMAMFATRCNREKKDTRSYNC
RVAESTYQHHPKRPSRQIHKGDITLVHTATGTLPIRSQHRASPSPSPTLSGVDRGQMCSR
QTNHSRQSLNSLVTLSSNHLPENFSLELTHTSPPVEQVSQLLSMLHQGQYQPRPNFRGNK
YSRSYRYALQDMDKFSLKDSGRGDSEAGDSDYDLGRDSPIDRLLGEGFSDLFVTDSHRFH
PAMKLCTDECKVLGHSDQCWMPPLSSGVSADYRSNMFIPGEDTQQLQEDDCDSSDSNEKK
KSFLTFGKDSQNDESEDLGTSSLLSEMNSVFQRLLPPQMDIYADCNEVGSISSLEKKKGH
LAAKPVPYPHGVAAWAASTHFQNPVNSVGIAPINHINPPSTISKWLPAMEEIPENYEEDE
FDNVLSQLAPCKRESKHELIDASELVAEINKLLQDVRQS
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atggcgaggctgcgggcgttcctcctcctcctcctgctgagtggctgggcggccgagcgg
acggcgggcatcacggccaagtacacggtgtacgaggagcagccggcgggcacggtgatc
ggccgcctctcggagacgctggccggccagctgcacccctccgcccgccgcttccgactg
atgcagcggctgaacgcgtcgctgctgcgggtgcgcgaggaggacggcgaggtgagcgtg
ggcggccgcctggaccgcgagcgcctgtgccggcgcgcggcgccctgccgcctggccttc
gacgtgatcacgctgcccaccgagcagctgcagctgatccaggtggaggtggaggtgctg
gacatcaacgacaacccgccgcgcttcccgcgcgcccgcatcccgctggagatctccgag
agcgcggcggtgggcgcgcgcttcccgctggacggcgcgctcgaccccgacctgggcgag
aacgcgctgcacggctactcgctcagcgccgagccgcacttcgccctggaggtgggcagc
cgcgccgacggcgcccgctacgccgagctgcggctggcccgcgagctggaccgcgagcac
caggcccgctacgagctccgcctgacggcctgggaccgcgggcagccggcgcgcagcggc
agctcgctgctgcagatcagcgtggccgactccaacgacaacagcccggccttcgagcgg
ccggcctacagcctgcggctgcccgaggacacgcgcgccggctcgctgctgctcgacctc
aacgccaccgacccggacgagggcagcaacgggcgggtgcgctactcgttcggcagccac
gtgtcggcgcaggtggtggacacgttccgcatcgaggccgactcgggccgcctgctgctg
ctgcgcccgctcgacttcgagctgagccagagctacgagatcgacgttcgcgcccaggac
ctgggccccaactcggtgccggcccactgcaagatcgtggtgcgggtgctggacgtcaac
gacaacgcgcccgagctggccgtcaccctggtgccgctgggcggcgacgtggccgccgtg
tcggagggcgcgccgccgcgcaccctggtggccgtggtgcgggtgcaggaccgcgactcg
gggccgaacggccaggtggcctgcacgctgcagggcgccgggcacttcagcatccagcgc
accggcgagaagaactacgtgatccagaccaaccagacgctggaccgcgagcgggtggcc
cagtaccggctggcggtgatcgcccaggacctgggcgcccccagcctcaccaccgtccag
tacctcaccgtccacatcggcgacgagaacgacaacgcgccgcagttccagaggagcagc
taccagctctccctgctcgagaacaactcgcccggcgtcttcctcaccctcatgacggcc
accgacgccgactcggccgacaacagccgggtgacctacaccatcctggactcctctgtc
gctggcagctccatcaccacctacctgaccatcgacccgtccatcggcgccatctacgcc
ctccgggcctttgaccgcgaggagatcagcagcatttccttcaccgtccaggcccgggat
gggggcacccctcagctggccaccaacaccaccgtccttttgaccatcctcgaccagaat
gataacccaccagccatcctcaagcccgatttgcacaatggctcggccgaggtgaccatc
ccgactaacgctgggcccaagtacttggcgaccaccatagcagcaatcgacaaagactct
ggcgtcaatgccgagttcacttgcagcatccttgatggcaaccagaatgggatgttcatt
gtggatccaaggacttgcgatgtttacaccaatgacagcttcactttggaccaggagaaa
cattgggaccttgttgtcgccgtgcaagataaagggtcaccgagtctcagtacagtggct
actttaaaagtgatgcttgaacagaaagaaacaccccagcacactgaacaaagtacttta
gatgactcaatgatcatcatcatatccctgggtgtgatttgtgctgttctgctcatcatc
atggccatgtttgccacaagatgcaaccgggaaaaaaaagataccagatcttacaactgc
cgagtggcagaatccacttaccagcaccaccccaaacgaccatccaggcagattcacaaa
ggggacatcactctggtgcacactgcgactggcacgttacccatcagatctcaacacagg
gcttctccttccccctcaccaaccctatccggagtggatcggggtcagatgtgcagcagg
caaaccaatcatagccgccagtccctcaacagtctggtgaccttgtcctccaaccattta
cctgagaacttttcactggagctcacacacacttctccacctgttgagcaagtttctcag
ctattgagtatgctgcatcaaggccagtatcaaccaagaccaaactttcgaggaaataaa
tattccagaagttacagatatgctcttcaagatatggacaaattcagtctgaaggacagt
ggtcgaggcgacagtgaagctggagacagtgactacgatttgggtagagattctcccatt
gataggcttctaggagaaggtttcagtgacctctttgtcaccgacagccatcgatttcat
ccagcaatgaagttgtgcacagatgaatgcaaagttttgggccattctgatcagtgctgg
atgcctccgttgtcttcaggtgtttctgctgattacaggagcaacatgtttattcctggt
gaggatacacaacaactacaggaagatgattgtgactcttcagattccaatgagaagaaa
aaaagctttttaacttttggcaaagattcccagaacgatgagtcagaggatctggggact
tcatccctcttgtcagaaatgaacagtgttttccaacgattgctgcctccacaaatggac
atctatgcagactgcaatgaggttggcagtataagttctttggaaaagaaaaaaggacat
ttggcagcgaagcctgttccctatccacatggggtggcagcttgggcagcaagcactcat
ttccagaatccggtgaacagtgttggtatagctcctattaatcacataaatccgccgtca
accatctctaaatggttgcctgccatggaggaaatcccagaaaattatgaagaagatgaa
tttgataatgttctcagccagcttgctccctgcaagcgtgagagtaaacatgaactcatt
gatgccagtgaacttgtggcagaaattaacaaacttttacaagatgtccggcagagctaa
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