Scyliorhinus canicula (smaller spotted catshark): 119963568
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Entry
119963568 CDS
T11175
Symbol
nfkb1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit isoform X1
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04010
MAPK signaling pathway
scau04210
Apoptosis
scau04218
Cellular senescence
scau04620
Toll-like receptor signaling pathway
scau04621
NOD-like receptor signaling pathway
scau04622
RIG-I-like receptor signaling pathway
scau04623
Cytosolic DNA-sensing pathway
scau04625
C-type lectin receptor signaling pathway
scau04920
Adipocytokine signaling pathway
scau05132
Salmonella infection
scau05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
119963568 (nfkb1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
119963568 (nfkb1)
04218 Cellular senescence
119963568 (nfkb1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
119963568 (nfkb1)
04621 NOD-like receptor signaling pathway
119963568 (nfkb1)
04622 RIG-I-like receptor signaling pathway
119963568 (nfkb1)
04623 Cytosolic DNA-sensing pathway
119963568 (nfkb1)
04625 C-type lectin receptor signaling pathway
119963568 (nfkb1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
119963568 (nfkb1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
119963568 (nfkb1)
09171 Infectious disease: bacterial
05132 Salmonella infection
119963568 (nfkb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
scau03000
]
119963568 (nfkb1)
Transcription factors [BR:
scau03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
119963568 (nfkb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Death
ANK_LRRK2
Motif
Other DBs
NCBI-GeneID:
119963568
NCBI-ProteinID:
XP_038648817
LinkDB
All DBs
Position
3:274869773..274977256
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AA seq
943 aa
AA seq
DB search
MMGDEDTYRLGVPGIYGIDDYNALDIPATIFNSPMGPTDSALQTTDGPYLQIVEQPKQRG
FRFRYGCEGPSHGGLPGASSEKNKKTYPTIKICNYVGQAKIVVQLVTFGRDTVHLHAHSL
VGKQCEKGICLIPVGPKEMITTFPNLGVLHVTKKNVASTLEQRMTHAYVMGYNNGVLIHQ
ELNHQHGEGYSQRELTEHEKKLIHEASIQQAREMDLSVVRLMFTALLPDSSCQFTRKLEP
VISDPIYDSKAPNASNLRIVRMDKTAGCVVGGDEVYLLCDKVQKDDIQVRFYEEDENGGI
WEAFGDFGPTDVHRQFAIVFRTPKYRDVDISKPASVFVQLRRKSDNETSEPKPFTYYPLI
KDKEEVQRKRLKLLPNFSDHFGGGPGSGGGGVYGGGGGAGGCTNYFTGFQGFSNYGSYAY
NPGTPNSSAGMKHAANCPTEHGDGNVMTAGNVISSFQPPQESTEFLSDSEATEPTGTGEE
LQEANQYFLEKALTLAERHASALLDYSITGDAKMLLAVQRHLTAVQDQNGDTALHLAIIH
LQPAVAKHLLQVIISLPEKSIINMRNDLYQTPLHLAVITKQVEVVEALLQAGADVGLLDC
HSNSVLHLAAEQGDVKMLGVLLSKRSKAVLELLRLRNNAGFSAIHLAVIANSLSSLRQLI
AAGAEVDGQEQHSGRTALHLAVEQENISLAGSLLLEGNAEIDSTTFDGSTALHIAAGRGC
AKLCALLMAAGADSQIENHEPLDDEDDDEGIFHGTTPLDMAASEEVYDILNGKPYQPKTA
SISPFPRGDLGQLDVEAKLELCKLLEVPEPSLNWMTLAQKLGLGILINAFKLSHSPAKTL
LDNYEVSGGTVMEILETLKSMGYSKAVAVLHKAMANSENTQPDERDNSPTPIEQQNSKCK
YIQIDSKSQQCDSVYDSGVETSFRRLSHMSSEAFSNNQTSFEL
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atgatgggtgatgaggatacgtatcgacttggagttcctggtatttatggcattgatgat
tacaatgctttagacatacctgccaccatatttaactcaccgatgggccccacagactct
gcactacagacaactgatgggccatatctgcagattgtagagcaacccaaacagaggggt
ttccgcttccgttacggatgtgagggtccatcacatggagggttacctggtgcctcgagc
gagaaaaacaagaaaacctacccgactattaagatctgcaactacgttggacaagcaaag
attgtcgttcagttggtgacctttggcagagatactgtacacctccatgcccacagtctc
gttggcaaacaatgcgagaaaggaatatgtttaattccagtggggccaaaggaaatgatt
acaacatttccgaaccttggtgtcctccatgtaacgaagaagaatgtggccagcacgctg
gagcagagaatgactcatgcttatgtgatgggttataataatggggttttaatccatcaa
gaattaaaccatcagcacggcgagggttacagccaaagggagctcacagagcatgaaaag
aaattaatccatgaggcatccatacagcaggcgagggaaatggacctcagtgtcgtccgc
ctcatgtttacagccttactcccagacagcagctgtcagtttacacggaaattggaacct
gtcatttctgaccccatctatgacagcaaggcaccaaatgcatcaaatttgcgaattgtc
agaatggataagactgctggatgtgtggttggaggagatgaggtttacttgctgtgtgat
aaagtccagaaagatgatatccaggttcggttctatgaagaggatgaaaatggtggaatt
tgggaagcgtttggggactttggtccgacggatgttcatcggcagtttgctatagttttt
cggacaccgaaataccgggacgtggacatttccaaacctgcatctgtgtttgtccagctt
cggagaaaatccgacaacgaaacaagtgaaccaaagccattcacatactacccgctgatt
aaagataaagaggaagtacaaaggaagcgactgaaacttttgccgaatttctcggaccat
tttggaggaggcccaggttcaggcggaggtggagtttacggaggagggggtggagcaggc
gggtgtaccaattactttactggatttcaaggattttccaactatggaagttatgcatat
aaccccggaacgccaaactccagtgcgggaatgaaacacgctgctaactgccctactgag
cacggcgatggtaatgtgatgactgctggcaatgtcatctccagtttccagcccccacaa
gaatccacagagttcctcagtgactcggaggctacagaaccaacaggaacaggcgaagaa
cttcaagaagcaaatcaatatttcctggagaaagccctgactttagctgagcgacacgca
agtgcccttctggactattccatcactggtgatgccaagatgctgctcgctgttcaacgc
caccttactgcagttcaagaccagaatggagatacagctttacatctcgcaattattcat
ctccaacctgccgttgctaaacaccttttacaagttatcattagccttcctgagaaaagc
atcatcaacatgaggaacgatctttatcagactccattgcacctggcagtgatcacaaag
caggtggaggtggtggaggcgttgctgcaagctggagctgatgtgggtctcctggattgc
cacagtaactcagtcctacacctggctgcggagcagggagatgtgaagatgctgggcgtc
ctgctaagcaaaaggagcaaagctgtccttgaactcctccgtctgcgaaataatgcaggt
ttcagtgccatacacctggctgtgatagcaaacagcctctcgtcgctcaggcagttgatt
gcagcgggagcggaggttgatggtcaggagcagcattccggccggactgcactccacctt
gccgtcgagcaggaaaacatctctttggccggtagccttctgttggagggcaatgctgaa
attgattccaccacatttgatggatctacggcacttcacatagcagcaggaagaggctgt
gccaaactttgcgcccttctaatggcagcaggtgcagattcacagatcgagaatcatgaa
ccactggatgacgaagatgatgatgaagggatttttcacgggaccacacccttggacatg
gcagcttcggaagaggtgtatgatatcctgaatggtaaaccctaccaaccaaaaactgca
tctatttctcctttcccacgaggtgatctagggcaactggatgtggaagctaagctggag
ctttgtaaactgttggaggtgccggaacccagtctcaactggatgacccttgcacagaaa
ttgggtcttggcattctaatcaatgcctttaaactcagccattcgccagcgaaaactctg
ctagataactatgaggtatctggtggcacagtcatggagattctggaaacattgaagtct
atgggctacagtaaagcagttgcagtgcttcacaaagcaatggcaaactcagaaaacaca
caaccagatgagagagacaactcaccaacacccattgaacagcagaacagtaagtgcaaa
tatattcagattgattcaaaatcccaacaatgtgacagtgtgtacgacagtggagtggag
acgtcatttaggagactgagccatatgtcttccgaagctttcagcaacaaccagacttca
ttcgaactgtga
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