Scyliorhinus canicula (smaller spotted catshark): 119964223
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Entry
119964223 CDS
T11175
Symbol
tprb
Name
(RefSeq) LOW QUALITY PROTEIN: translocated promoter region b, nuclear basket protein
KO
K09291
nucleoprotein TPR
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119964223 (tprb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scau03019
]
119964223 (tprb)
Messenger RNA biogenesis [BR:
scau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
119964223 (tprb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
DUF1664
Motif
Other DBs
NCBI-GeneID:
119964223
NCBI-ProteinID:
XP_038649434
LinkDB
All DBs
Position
4:82679119..82841412
Genome browser
AA seq
2268 aa
AA seq
DB search
MAAAVAVLQQLLDRAELAKLPKLTVSKLEKFITDKEADFTLLKTKYERFKIDSEQQYFEV
EKRLTQGQEKLVSEMQECQQLREEHLALREQLKEIRAKNEELGSATERLISVENQLSRTK
EELDNEKRELVRTLERRSQEVEHLNEDLKRLNDKLVEANSTKIDLQLKLDELQVTEVSIK
YRERRLEQEKELLINQNSWLNAELKTKTDELLELRREKSNEILELRCNLENKKDEMCSME
EQIQTLKAAKENFEKQIEDLMSKLKESKEQSATMEERFRNELNAHLKLSNLYKGSADDSE
AKATELTRAVEELHSLLKQANEAHRITEDRLVELDSAKTVAVGELNEKINKLEKELENAN
HLLSASKRKGPASLSEDELAAMSPTAAAVAKIVKPGMKLTELYNGYVEAQDQLLLVKQEN
KRVNKYLDEIVKEVEMKAPLLKRQREEYERVQKAVAHLSAKLEDAMKEIRRLQRGTDDAN
KHSSLLSRENQRLKMQVRDLSQQNRVLLMELEDARGNHILREDEVSSADITSSSEVITQH
LVTYRNVEELQQQNQQLLVAIRELAEKQEQEEEEKTSTRISELELNLAEALNELGRLRDA
RTHQMQLVESIVRQRDMYRILLAQMTGVTIPVQGPATEGTSLISSTPKPCPGKPKSVPQM
TSTPAPAVESTELVQARTALKQLQLHFESYKAEKAENDKMLNEQNEKLQDQLTQLRTQST
KLSTQLEFASKRYEMLQNNVDGFRREIASLRDRCQKLTTTVQKQEHIISNMTQDLRASTE
KLALEETRGENLRKEKDMLKMVEVRLTQERDSKFAEHRGQSLLLTNLQSIQLSLERAETE
TRQRLNSQIENXEREIEKLKKKVEYEVDQRHLLGRNHDIHLVELRKQLETDXNLHAKTKE
LLKNAEKQINTLKTHLNNVETKLAESKGSDSQGKTNVSDDVDDLLSRLRQAEEQVSELRE
RLKTTASNVEQYRDIVLSLEESLSKEKQVTEEVRAAVESRLKESAEYQRQLEKRILEAEN
EKQALTDEKRKTIENLEQQDEISKLSIRCEDLQKQNKLLLEQVETLSNKMVTTVQEASQS
SFNMSFNEEGKSQEQLLEILRFVRREREIAETRFEVAQVESLRYRQRVENLERELKEVQE
SLNSEREKVQVTAKTLAQHDELMKKTETMNVLIETNKMLRDEKERLEQELQQTRAKICKL
ESDILPLQESNTELSEKSGMLQAEKKLLDEDLKRWKARAQQLISQQKETDPDEYKKLLSE
KDTNTKRIQQLTEETGKLKTELARLNASSSVSQRDVQTLKVELTRVTVDRDKLKQEVLAR
VSDIQEKNKTITQVKKIGRRYKTQYEELKAQYDKVVAETSSQHTAEQQAEQSSAQITQEL
QETLAQSESRAKALESQAEALQKSVCEKESEVKKLQDEVSQLHSELSRLRQELQDKANLE
EQLRQQIQEKEEKTKKAILVAKQKITQIAGLKEQLAQENEELKQHNEEFQQRITSLDQQR
EELEVRMSALKSQYDGHIGRLKRELKEHQDRQHDQREEPQEITKTSEPQRQLDQQRQITL
KQTPASVDRGSSSTSDPPTANIKPTPLVATPSKVAAGPVPGSKSTPRASIRPMVTPATVT
GPAITPTATVMPTTQVETQEAMQSEGPVEHVTVFGSTSGTVRSTSPNIPNLSQPILTVQQ
QQTQATAFVQPTQQTLQVEPANQDPSANMVDVGQNPQMERPSTSTAVFGTVSATTVPKRQ
REDDDETSADNVGHGQDESLEHQSKKLRVVRVEEHLQEVDESAETGTGMQMQSENLDSQD
SMSQVVIEDYPPSQLMEDNEETSHSLDLVPQPPEHQQNTQSSQNSQTQTEYIIIESDEDA
ENEEDQEQEEYDDEDDDDDTGIEDGDGDGDDSNGGSPGGEDNYDGGDAEGANGTEPSTGN
EQSGGSCKEGENTQMPENNSGGEGNVPTTESYSTETSRDQQTMSERQAPRPLRSPRRPPH
PLPPRLTLQPPAQELGPPAQRFPPARRPSSSRGGIQLTPGVGGVQHFFDEDDRMVPSTPT
LVVPHRSDGFAEAIHSPQVTGVPRFRFGPPEDMSQTSSSQSDLGQLASQGGLGMYETPIY
LAAVHEDESGGRSVPTTPLQVHAPVTVFNEGTQSDVTEHASQSVPMVTTSMGLSSTVDSG
GGEDGDEVFVEGADQESLSSDVMLEIEGHQEEESAQTSEESDLPSTSQDPPSSSADASVS
QPKPLRRVRLYPQMGRTVVRGRQFISRRGMSHSMSGRGGGGINKGNHN
NT seq
6807 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggctgtggctgtattgcagcagttgctcgatcgtgctgaactcgccaaactc
cccaaacttactgtgtccaaacttgagaagtttatcaccgacaaagaggcggatttcacg
ctccttaaaaccaaatatgagcgttttaaaattgacagtgagcaacagtattttgaagtg
gagaaacgactaacccagggacaagaaaaattagtgtcagagatgcaagaatgtcaacag
ctgcgtgaggaacatttggcacttcgtgaacagttgaaagaaatcagagcaaaaaatgaa
gaactaggatctgctacggaaagattaatcagtgttgagaatcaactttcacgcacaaaa
gaggagctggataatgaaaagcgagaactggtgagaacacttgagcgtcggtcacaggaa
gttgaacacctaaatgaggatttgaaacgactaaatgataagcttgtagaagcaaattca
accaagatagatcttcagttaaaacttgatgagcttcaggtaacagaagtctccattaag
tatcgtgaaagaaggcttgagcaagaaaaggaattgctgattaatcaaaacagttggctg
aatgctgaattaaaaaccaagactgacgagctactggaacttcgtcgtgagaaaagcaat
gaaatccttgaactccgatgcaatctggagaacaaaaaagatgaaatgtgcagcatggaa
gagcagattcagactttaaaagcagccaaggaaaactttgaaaagcaaattgaggattta
atgagtaaactgaaagagtctaaggagcagtcagcaaccatggaggaaaggtttcgaaat
gaattgaatgcccatttgaagttgtcaaacttgtacaagggttctgcagatgactctgaa
gcaaaggcaactgaactgactagagcagttgaggaacttcatagtctgttgaaacaggca
aatgaagcccatagaataactgaagatcgactggttgaattagattccgcaaagaccgtg
gcagttggtgaactaaatgaaaagataaacaaacttgaaaaagaattggaaaatgctaac
catctcctgtcagcttccaagcgcaaaggaccggccagcctttccgaagatgagctggca
gctatgtcacccactgcagccgcagttgctaagattgtaaaaccaggaatgaaacttaca
gagttatataatggatatgtggaagcccaggatcagttgctactggtaaaacaggagaat
aagagagtaaacaaatatttggatgaaattgtgaaagaagtggagatgaaggctccactt
ttgaagcgtcaacgagaagaatatgaacgtgtgcagaaggctgtggcacatctctcagct
aaactagaagatgccatgaaggaaatccgccgtttgcaaagaggtactgatgatgcgaat
aagcattcttcactgctcagcagggagaaccagagattaaaaatgcaagtgcgagacctc
tctcagcagaatagagttcttttgatggaactggaggatgctcgtgggaatcatattcta
cgtgaagatgaagttagttctgccgacataactagttcttctgaagtcattacacagcat
ctggtaacttatcgtaacgttgaggagttgcaacaacagaatcaacaactgctggtagcc
attcgtgaacttgctgagaaacaggaacaagaggaagaagaaaaaacttcaacacgaatt
tctgagcttgagttgaatcttgcggaagccttaaatgaactcggacgacttcgtgatgcg
cggactcatcagatgcagctggtagaatcaattgtacggcagcgtgatatgtaccgcata
ctacttgcacagatgactggagtgaccattccagtccagggtccagcaacagagggtaca
tctttaatttcgtccactccaaaaccgtgtccagggaaaccaaaatcagtgccacaaatg
acctccactccagctcctgcagtggaatccacggagcttgtgcaagcaaggaccgcactt
aaacagctccagttacattttgaaagttacaaggctgaaaaggcggagaatgacaaaatg
ttaaatgaacagaatgagaaacttcaagatcaactgacacaactgcgaacacagagtaca
aaactgtctacgcagttggaatttgcttctaaacggtatgagatgctgcagaacaatgta
gatggattccggcgtgaaatagcatccctacgcgataggtgtcagaagctcaccacaact
gttcagaaacaggaacacatcattagcaacatgactcaagatttaagggcatcaactgaa
aaattggctctagaggagactcgtggtgaaaacttgaggaaagagaaagatatgttgaag
atggtggaagtacgtcttactcaagagcgagattcaaagtttgctgagcacaggggccaa
agcttactgctaacaaatctacagtctattcagttgagtctggagcgtgcggaaactgag
accaggcaacgtcttaacagccagattgaaaacnaagaacgtgaaatagagaagctgaaa
aagaaagttgaatatgaagtggatcagcggcatttgcttggcaggaaccacgatattcac
cttgtggaattgaggaagcagcttgaaactgatnctaatcttcatgcgaagacaaaagaa
ctcttgaaaaatgccgagaaacaaattaacaccttgaagacacaccttaataatgttgaa
actaaactggcagagtctaaaggaagtgattctcaagggaaaaccaatgtgagtgatgat
gttgatgatctcctatcacggcttcggcaggctgaagaacaagtgagtgaattgagagag
cgtctcaagactactgcaagcaatgtggaacaatacagagacatagtccttagtctggag
gagtccctcagtaaggagaagcaggtgacggaagaggtgcgggctgctgtagaatctcgc
ctcaaagaatctgcagagtaccagaggcagttagaaaagcgtatattagaagctgagaat
gagaaacaagcgctcactgatgagaagcgaaaaactatagaaaacttagaacaacaggat
gaaatttcaaagctgtcaatacgttgtgaggatctgcaaaaacagaacaagctgttgctt
gagcaagtggagactcttagtaataagatggtaaccacagtgcaagaagcaagtcaaagc
tccttcaatatgtcttttaatgaggagggaaagtcccaggaacagctacttgaaattctg
agatttgtgcgacgagagagagaaattgcagaaacaaggtttgaagttgcccaagttgag
tcactgcgatatcgccagcgagtagagaatttagagagagaattgaaggaagtacaggaa
agcctcaactcggaaagggaaaaggtgcaggtaactgccaaaacactggcccaacatgat
gagctgatgaagaagactgagaccatgaatgttctaattgagaccaataagatgctgaga
gatgaaaaagagaggctggagcaagaactccaacagacgcgagcaaagatttgtaagttg
gagtctgatatcctacctcttcaggagtctaatactgaacttagtgagaaaagtggcatg
ttgcaagcagagaaaaagctgcttgatgaggatctcaaacgctggaaggcccgtgctcag
caattaattagtcaacagaaagagactgatcctgatgagtataagaagctattatcagag
aaagatacaaataccaaacgcattcaacaactgactgaagaaactgggaagctgaagact
gaacttgctcgactaaatgcatcgtcctctgtatcacagcgggatgtgcagactttgaag
gttgaactcacaagagtgactgttgatcgtgataagctgaaacaagaggtgttggcgagg
gtgtcagatattcaggaaaaaaacaaaactattacccaggttaaaaagattggtcggaga
tacaagactcagtatgaggagctgaaagcacaatatgataaggttgttgctgagacatcc
tctcaacatacagcagaacagcaagcagagcagtcctctgctcaaatcactcaggaattg
caagaaacacttgctcagtctgaatccagagctaaggcacttgagtctcaggcggaagcc
ctgcagaagtccgtttgtgagaaggagtcagaagtgaaaaaattgcaagacgaagtttcc
cagttacacagtgaactttcccgcttgcgacaggaactgcaggacaaagcaaaccttgaa
gaacagcttcgacagcagattcaggagaaggaagagaagaccaagaaagcgatattggta
gccaaacagaagataacacaaatagctggtttgaaggagcaattggcacaagagaatgaa
gagttgaaacagcacaatgaagaatttcaacaacgtatcacaagtttagatcagcagaga
gaagagctggaggtgcgcatgagtgcactgaaatcacaatacgatggccacattggtcga
cttaaacgggaactgaaggagcatcaggatcgacagcatgaccagcgtgaagagccgcag
gaaataactaagacttcagaaccacagaggcaactggatcaacagaggcaaattaccctc
aaacaaactccagcatctgtggacagaggaagttcgagtacatctgatcctccaacagcc
aatataaagccaactcctcttgtggcaacacccagtaaggtagctgctgggccggttcct
ggaagtaaatcaacaccaagagccagtatccgaccaatggttactccagcgacagtcact
ggaccggctataacaccaacagctacagtaatgccaacaacacaggtagaaacccaagaa
gccatgcagtcagaagggccagttgagcatgtaactgtttttggtagcacaagtggaaca
gtacgttcaacaagtccaaatatcccaaacttgtctcaacctatcttaacagtgcaacaa
caacagacacaggctactgcctttgtgcaacccactcaacagactcttcaggtagaacca
gcaaatcaggacccttctgcaaacatggtagatgtcggtcagaacccccaaatggaaaga
ccttccacttctacagcagtgtttggaacagtttcagccacaactgtgcccaagcgccag
cgtgaagacgatgatgagacaagtgcagataatgtaggtcatggtcaggatgaatctctg
gaacatcagtcaaagaaattgagagttgtcagagtggaagaacatttgcaggaggtagat
gaaagtgcagaaacgggaactggaatgcagatgcaatcagagaacctggattcgcaagac
tctatgtcacaggtggtcattgaagattatcccccttctcaactgatggaggacaatgag
gagacatctcattcattggatttggtacctcaaccacctgaacaccagcagaatacccag
tcatcacaaaattctcagacacaaactgaatatattataatagagagtgacgaagatgca
gaaaatgaagaggaccaagagcaggaggaatatgatgatgaggatgatgacgatgatact
ggaattgaggatggtgatggcgatggtgatgacagtaatggaggtagtcctggtggcgaa
gataattatgatggtggtgatgcagagggtgcaaatgggacagagcctagcacaggcaat
gagcaaagtggcggctcttgtaaggaaggagaaaatacccaaatgccagaaaacaattct
ggaggtgaaggtaatgtccccactacagaatcgtatagcacagaaacttcaagagatcag
cagaccatgtctgaaagacaggctccacgacctctacgatcaccgcgaagaccacctcat
cctcttcctccacgattaacacttcaacctccagcacaagagctgggaccacctgcacag
cgattcccaccagcaaggcggccttcatcaagccgaggaggaatccagcttactccaggt
gttggaggtgtgcaacacttctttgatgaagatgacaggatggtaccaagtacaccaact
cttgttgtgcctcatcgatcagatgggtttgcagaagccattcattctccgcaggttact
ggagtccctcggttcaggtttggaccacctgaagatatgtctcaaaccagttcaagtcag
tcagaccttggacagttggcatcacaaggagggctaggaatgtacgaaactcccatttac
cttgctgctgttcatgaagatgaatctggaggccgtagtgtacctactaccccactgcaa
gttcatgcaccagtaacagttttcaatgagggtacacagtcagatgtaaccgaacatgct
tctcaatctgttcccatggttacaacgtccatgggactgtctagtactgtcgattctgga
ggtggtgaagatggggatgaagtgtttgtggaaggagcagaccaagagagtcttagttcg
gatgtgatgttggaaattgaagggcaccaggaggaagaatctgctcagacatctgaagag
tctgatctcccatcaactagtcaggatcctccttccagttcagcggatgccagtgttagt
cagcccaaacctttacgaagagtacggctttatccacagatggggagaactgttgttcga
gggagacagtttattagccgtagaggtatgtctcattcaatgtctggaagaggaggagga
ggaataaacaaaggaaatcataattga
DBGET
integrated database retrieval system
