KEGG   Scyliorhinus canicula (smaller spotted catshark): 119964245
Entry
119964245         CDS       T11175                                 
Name
(RefSeq) roquin-1-like
  KO
K15690  RING finger and CCCH-type zinc finger domain-containing protein
Organism
scau  Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:scau00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:scau03000]
    119964245
   04121 Ubiquitin system [BR:scau04121]
    119964245
Transcription factors [BR:scau03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    119964245
Ubiquitin system [BR:scau04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    119964245
SSDB
Motif
Pfam: Roquin_1_2-like_ROQ ROQ_II zf-CCCH zf-RING_5 zf-RING_UBOX zf-RING_2 zf-C3HC4_4 zf-C3HC4_3 Prok-RING_4 zf-CCCH_UNK zf-C3HC4 zf-CCCH_4 zf_CCCH_4 zf-RING_10 zf-C3HC4_2
Other DBs
NCBI-GeneID: 119964245
NCBI-ProteinID: XP_038649453
LinkDB
Position
4:complement(128359816..128575774)
AA seq 1079 aa
MPVQAPQWTDFLSCPICCQTFDENIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IDMLPVNSALLQLVGAQIPEPQSVTLCTGAENTKHYEEAKKCVEELALYLKPLSSTRGVV
LSSAAQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDLSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLECGLVAVKTVVHGLVDFIQNHSKKGTDQQQSAQSSKYKTSMCR
DLRQRGGCPRGASCTFAHSQDELEKFRMRNKRLAAGRSLSQSLTQLSKVGGVMSVNSSAL
SDEGSLETGTKPVSIQNGMVAASNSIAQLISRGTDCAYDIAMKPGKMSDMSMSAPGSVSG
SPPDSRMEMPQKNSLGALPLNALSVPPRISAELPPMPVPKPIQMVPRGSQMYPPTQQPDV
YYQDPRTSAASYEAAQYPPNLYYPHHSSGSVTPYVPQYRRANNVAEAPMPPSTLQYQDHY
PAYISERMGSSQYSSPQQYPLAQPVSGMYPAHYGGRRVYHPPQSYTREDMRNSPIPVDMP
SAVANYITEPRERYVPENYYTVSPHPNQMRPPYRDPHGRVPQHQPQPQPSLDYLHRRRKE
LMAQLEERKTISPPPFPPTAALPSSFVDVSPEYSDEDLKAVKKYKDHEYTAQYSPWSCDT
IGSYIGSQNAQPKDVMPSSGMEMNNVDNKGLREQLMNLDLQRRAAESKEEDPIIPFGELP
TVSKFGAISRTSKTSYQTTGPVQAVASQGIATKPISVSAFMLQPAHSPVLLQREVTSQVP
QQHTSWPSLMSSEQLSLELHQVEREIGKRKYELEAESRPSLDMQYKLASNSQTENGQSEQ
QHKAPEDLQPSLSEGSKVGASSFITESSISALTNKAASLNLAPDTEGAGDRCDSQQNGL
NT seq 3240 nt   +upstreamnt  +downstreamnt
atgcctgtacaggctccacaatggacggacttcctctcctgtccaatctgctgccagacc
ttcgatgagaacattcgcaagcccatcagcttaggctgtggacacacagtctgcaagatg
tgtctcaacaagctccatcgcaaggcctgccctttcgaccaaaccactatcaacaccgat
atagacatgttacctgtgaactctgcactgttacagctggtgggagcccagattccagag
ccgcagtctgtcaccttgtgtactggagcagaaaataccaaacactacgaggaagcaaag
aaatgtgtggaggaactggcactgtacctcaagcctctcagcagcaccagaggtgtggtg
ctcagcagtgctgcgcagagcgtgctgagcaggcccatgcagaggaagctggttaccctg
gttcactgtcagctggtggaagaagaaggccgaattcgggcaatgagagctgcccgctcg
ctgggggagcgcactgtcactgagctcatccttcaacatcaaaacccacagcaactgtca
tccaatctctgggcagctgtcagagccagaggctgccaattccttgggccagctatgcag
gaagaagccctcaaacttgtcctccttgcacttgaggatggctctgcactctccagaaag
gttttggtactgtttgtagtccagagactggaacctcgatttcctcaagcctcgaagacc
agcattgggcatgtggttcaactgctctacagagcctcctgtttcaaagtcacaaagaga
gatgaggattcttcgttgatgcagctgaaggaggagtttcggacatatgaagcactgcgg
cgggagcatgattctcagattgtgcagattgccatggaagccggccttcgcattgctccc
gaccaatggtcctccctcctttatggcgacctgtcacacaaatctcacatgcaatccatc
attgacaagttgcagacaccggcctcttttgcacagagtgttcaggaactaacgattgct
ctgcaacgaactggagaccctgccaatttgaaccggcttcggccgcacctggaattactg
gcgaacatcgaccccagtccagatgcacctcctccaacgtgggaacagctggagtgtggc
ttggtggcagtcaagacggtagtgcatggcttggtggattttatacagaaccacagcaaa
aaaggcactgaccagcagcagtcagcacagagcagcaagtacaagacaagcatgtgccgg
gacttgagacaacgggggggctgtcctcgcggagccagctgcaccttcgcccattcccag
gatgaacttgaaaaatttcgcatgcggaacaagaggttagcagctggccggtccctcagc
cagtcccttacccagctcagcaaggtcggaggggtgatgtcggtcaattccagcgcctta
tcagacgagggctccttggaaactggcacgaaacctgtgtccattcagaatggcatggtg
gcagcgagcaacagcatcgcccaactgatctcccgcgggactgactgtgcctacgacatc
gccatgaagccgggcaagatgagtgacatgagcatgagtgcgccgggatcagtgtcggga
tctccacctgactccaggatggagatgccccagaagaactctcttggtgccttgcccctc
aacgctctctctgtgccaccccgaatcagcgctgagctgccacccatgccagtccccaag
ccaattcagatggtgccgcggggatcgcagatgtacccacccactcagcagccagacgtg
tactaccaggacccgcgaacctctgctgcttcctacgaggcagcacagtatccaccaaac
ctttactatcctcaccactcttcaggatctgtgactccatacgtgccacagtatagacgg
gctaacaacgttgcagaagctccaatgcccccttccactcttcagtaccaggaccattac
ccagcctacatttcagagaggatgggaagttctcagtactccagccctcagcagtaccca
ctggcacagccggtgtcaggaatgtacccggcgcattacggtggtcggcgggtgtaccac
cctccacagtcctatacgcgggaggacatgcgaaacagccccataccagtcgatatgcca
tctgcagtcgccaactacatcacagagcccagagaacgctatgttcctgaaaactactac
accgtgagccctcatcccaaccagatgaggccaccttacagggaccctcatggcagagtg
ccccagcatcaacctcaacctcaaccaagcctggattatcttcatcgacgccggaaagag
ttaatggcccagctggaggagcgcaagaccatttctccaccacctttcccaccgaccgca
gcactgccatcttcctttgtcgacgtctccccggagtattctgatgaagacctgaaagca
gtcaagaagtacaaggaccatgaatacactgctcaatactcaccctggtcttgtgacact
attggttcctatattggcagccagaatgcacagcccaaagacgttatgccttccagtggc
atggagatgaataatgttgacaataagggcctgcgggagcagctcatgaatctggacctt
cagaggagggcagccgagagcaaggaggaggatcccatcataccctttggggagttgcca
actgtttccaaatttggtgccatttctcgcacctccaaaaccagctatcagacaacagga
ccggtgcaggctgtggcctcgcaaggcattgccaccaagcccatcagtgtctcagctttc
atgctccagcctgctcacagtccagtgttgttgcagcgagaggtcaccagccaagttcca
caacagcacacctcgtggcctagcctaatgtccagtgagcagctgagcttggagctgcac
caggtcgagagggagatcggcaagaggaagtatgagctggaggcggaaagccgaccctcc
ctggacatgcagtataagctggcgtctaacagtcagactgagaatgggcagtctgaacag
cagcataaggcccctgaggacctgcagccttccctcagtgagggatccaaggtcggagcc
tccagcttcattacagaaagctccatcagtgcgctcaccaacaaagctgcctctctgaac
ctggcccctgacaccgagggagctggggaccgctgcgacagccaacagaatgggctttaa

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