Scyliorhinus canicula (smaller spotted catshark): 119964360
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Entry
119964360 CDS
T11175
Symbol
fubp1
Name
(RefSeq) far upstream element-binding protein 1 isoform X1
KO
K13210
far upstream element-binding protein
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scau03019
]
119964360 (fubp1)
03041 Spliceosome [BR:
scau03041
]
119964360 (fubp1)
Messenger RNA biogenesis [BR:
scau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
119964360 (fubp1)
Spliceosome [BR:
scau03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
119964360 (fubp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_1
KH_2
KH-I_KHDC4-BBP
KH_KhpA-B
FUBP_C
FAM161A_B
Motif
Other DBs
NCBI-GeneID:
119964360
NCBI-ProteinID:
XP_038649664
LinkDB
All DBs
Position
4:13546187..13584006
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AA seq
710 aa
AA seq
DB search
MSEYSAVAPPNALSGSGGGGGAGGGAGGGGAGGGGGGGGGGGGGAGGGGFKNDAFADALQ
RARQIAAKIGGDAGTPINTSDYGYGGQKRPLEDGVEQMLCFADQPDTKKVAQNDPFGAQL
AAMHQQRSIATEEYKVPDGMVGFIIGRGGEQISRIQQESGCKVQIAPDSGGLPERSCMLT
GSPDSILAAKRLLDQIVERGRIGPGTHHGDGPGTSVQEIMIPASKAGLVIGKGGETIKQL
QERAGVKMVMIQDGPQPTGSDKPLRITGDPFKVQQAKDMVMDLIRDRDQGFREQRNEYGS
RLGGTNESLDVPVPRFAVGIVIGRSGEMIKKIQNDAGVRIQFKPDDGTTPERIAQILGPP
DRCQHAAEILTDLLRSVEAGMPPGPGGPGPGRGRGRGQGNWNMGPPGGLQEFTFTVPSSK
TGIIIGKGGETVKAISQQSGARIELQRNPPPNADPNFKMFIIRGSTQQIDYARQLIEEKI
GAPTGPPGPPGPHGPHGPHLPPGPHGPPGPPGPGTPMGPYNPGPYNPGPPGPPQHGPPAP
YAPQGWGNAYQPWQQQGQPDPNKAGDANTAAWAAYYAQYYQQQAQQPPAASSTGQGNTPN
SAQAGDPNQPNPAQAPQTDYTKAWEEYYKKLGQQGQPQGAQQDYTKAWEEYYKKQSQAAQ
ASGTAAQPGGQPDYSAAWAEYYRQQAAYYSQTNSQGIPQHPPAQQPPQAQ
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagtactcagcagtggcgccgcctaacgcgttaagcggcagcggcggtggcggc
ggcgccggcggtggagcgggaggaggcggagcaggcggtggaggaggaggcggcggcggc
ggtggtggtggtgccggcggcggcggctttaagaacgacgcgttcgccgacgcccttcag
cgggccaggcagatcgcagcaaaaattggaggggatgcaggaacaccaataaatacgtct
gactacggatacggtggacaaaaacggcccctggaagatggagttgaacaaatgctttgt
tttgcagatcaaccagataccaagaaagtcgcacagaatgatccatttggagcacaacta
gctgcaatgcatcaacagaggtcaatagccacagaggagtacaaagtacccgatggcatg
gttggatttataattggtcgaggtggggaacagatctcgcgcatacagcaagagtctggg
tgcaaagtacagattgcgcctgacagtggtggtttaccagaaagatcctgcatgttgaca
ggaagtcctgattccattctagctgcaaagaggctacttgatcaaatagttgaaagaggc
cgaattggtccaggtacacatcatggagatggaccaggtacttcagtgcaggagatcatg
attcctgcaagcaaggctggacttgttattgggaaaggtggagaaacaatcaagcagttg
caagaacgtgcaggagtgaagatggtgatgattcaagatggacctcagccaacaggatca
gacaaacccctccgcattacaggagacccgttcaaagtgcagcaagccaaggacatggtg
atggatctaattcgtgaccgagaccaaggtttcagggagcaacgcaatgagtatggatcc
cgtttgggaggaactaatgaatcattggatgtccctgtacctcgctttgctgttggtatt
gtaatagggagaagcggagaaatgatcaagaagattcagaacgatgcaggtgtgaggatt
cagttcaagccagatgatgggacaacgccagaaagaatagcccagatcctgggccctcca
gacagatgtcagcatgctgcagaaatacttacagacctcttacgaagtgtggaggccggc
atgcctccaggtcctggtggccctggacctggcagaggaagagggagaggccaagggaac
tggaatatgggcccccctggtggacttcaagagttcactttcacagtacccagcagcaag
actggcataatcattggcaaaggtggtgagaccgtaaaagcaattagtcaacagtcagga
gcacggatagagcttcagagaaacccacctccaaatgctgatcccaactttaaaatgttt
attattcgtggatcaactcagcagattgattatgctagacaacttattgaagagaagatt
ggggctcctactggtcctcctggaccacctggtccccatggtcctcatggaccccacttg
cctcctggccctcatgggccacctggtcctccaggccctggaactccaatgggaccttat
aatccagggccctataatccagggccgcctggccctcctcagcatggtccaccagcaccg
tatgctccacaaggatgggggaatgcctaccagccctggcagcaacagggccaaccagat
ccaaataaagctggagatgcaaatacagctgcatgggcagcatattacgctcagtattat
cagcaacaagcacagcagccacctgcagcttcaagcactggtcagggcaataccccaaat
tctgcacaggcaggtgaccctaaccagcccaacccggcccaggctcctcagaccgattat
acgaaagcctgggaagaatattacaagaaattaggtcaacagggacaaccacaaggagcc
caacaggactacaccaaagcttgggaagaatattacaagaaacaaagtcaggcagctcaa
gcttctggcacagcagctcagccaggcgggcaacccgactacagtgcagcgtgggctgag
tactacaggcagcaagcggcttactacagtcagacaaactcacagggaattccccagcat
ccgccggcacagcaacccccacaggcccagtaa
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