Scyliorhinus canicula (smaller spotted catshark): 119964471
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Entry
119964471 CDS
T11175
Symbol
pif1
Name
(RefSeq) ATP-dependent DNA helicase PIF1
KO
K15255
ATP-dependent DNA helicase PIF1 [EC:
5.6.2.3
]
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scau03032
]
119964471 (pif1)
03029 Mitochondrial biogenesis [BR:
scau03029
]
119964471 (pif1)
Enzymes [BR:
scau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
119964471 (pif1)
DNA replication proteins [BR:
scau03032
]
Eukaryotic type
DNA Replication Termination Factors
Other termination factors
119964471 (pif1)
Mitochondrial biogenesis [BR:
scau03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial DNA replication factors
Mitochondrial DNA maintenance factors
119964471 (pif1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PIF1
Pif1_2B_dom
AAA_30
AAA_19
AAA_22
Herpes_Helicase
UvrD_C_2
AAA_5
Mg_chelatase
PhoH
AAA_7
RsgA_GTPase
AAA_16
ABC_tran
AAA_29
AAA
Motif
Other DBs
NCBI-GeneID:
119964471
NCBI-ProteinID:
XP_038649940
LinkDB
All DBs
Position
4:35228537..35267649
Genome browser
AA seq
643 aa
AA seq
DB search
MLSASTGAEVQCSLTIEYLNPAGQATKRKSIRNAVITLGRNEFRDIILRVHDGKLYQNFA
LREIQLFTQFIRDGKSSIKLIPENIQILISNCPPDKLKVLFKTLSIKYAADKISRPVSGR
TRLLSTLPRMFDTISPVQVQDVKRANQLQSQGTVQTPISAKGLKNQVGIGGPSKQIKRSR
TISSENCLVTEMKLSKKPTLTMPVIRKLTKEQSHVLGMVLKGKNVFFTGSAGTGKSFLLK
RIVGALPPKSTYTTASTGVAACHIGGTTLHAFAGIGSGKAPLQQCIELAQRSGIVRQWQS
CRHLIIDEISMIEGEFFDKLEAVARVVRNSNEPFGGIQLIICGDFLQLPPVSRKNEKSKF
CFQAKSWQKCIHVNMELTDVRRQTDKKFIAMLQAIRLGRCPEEVTAQLIKTANQKIDRDG
ILATRLCTHKDDVELTNQQKLQQLPGESHTFEAVDSDPMLIQTLNRQCPAGQTLQLKKGA
QVILTKNLDIERGMVNGARGVVVDFEPGNKTLPRVRFLCGVIETIKPERWMIKALGGTYL
TRHQLPLKLAWAISIHKSQGMSLDCVEISLARVFESGQAYVALSRARSLEGLRVMDFDSR
VVHANTDVLRFYSRLKKERVLMQSTLDSHIEMEDQENRIPGRL
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgctatctgcctctacaggcgctgaggtccaatgcagcttgacaattgaatacctcaac
ccggccggccaggcaaccaaacgcaaaagtattcgcaatgccgttatcacccttgggcgc
aatgaattccgtgacattattctccgagtacatgatggcaaactataccaaaactttgcc
ctacgtgaaatccaacttttcacgcagtttattcgggatggaaagagttcgatcaaactg
attcctgaaaatattcagatcctaatttcgaactgtccgccagacaagctgaaagtactc
tttaagaccctttccatcaaatacgctgcagataagattagcagacctgtcagtgggcga
acgcggctactctccacactcccacggatgtttgacacgatcagtcctgtgcaggtacag
gacgtgaaacgagctaaccagcttcaatcacaggggactgtacaaacaccgatttctgcc
aaagggttgaagaatcaagtaggcattggggggccaagcaagcagatcaaacgctcacgg
accatctcatcagaaaattgtctggttaccgagatgaaactttccaaaaagccaacactg
acaatgccagtgataaggaagctcacaaaggaacagtcacatgtccttggcatggttctg
aaaggaaagaatgtcttcttcactggaagtgctggaactggaaaatccttcttgctgaag
aggattgtgggggcattgcctccaaaaagtacctataccacagcgagtactggagtggct
gcctgtcacattggaggaacaactctccatgcatttgcaggaatcggttcaggaaaagct
cccttgcagcagtgcatagagctggctcagcgatctgggattgtaagacagtggcaaagc
tgcagacaccttatcatagatgaaatctccatgatagaaggagaattctttgacaaactt
gaagcagtggccagggtcgttcggaatagcaatgaaccatttggtggaatccagctgatc
atttgtggagattttctacagcttcctcccgtgtcccgcaaaaatgaaaaatccaaattt
tgcttccaggctaagagttggcagaagtgcatccacgtgaacatggaactaacagatgtg
cgaagacaaactgataaaaagttcattgcaatgctgcaggctattcggcttgggaggtgc
ccagaagaagtcacagcccagttgatcaaaacagccaaccagaagatagatcgagatgga
atcctagcaacacggctttgcacgcataaagatgatgtggaattgaccaaccagcagaag
ctccagcagttaccaggagagtcacacacatttgaagctgttgatagtgaccccatgctc
atacaaacgttaaataggcaatgtccagcagggcagacactgcaactaaagaaaggggca
caggtgattctgactaaaaacttggacatcgagaggggaatggtaaacggtgctcgaggc
gttgttgttgattttgaacctggaaacaaaacgctgcccagagtgcgatttttatgtggt
gttatagagacgataaagccagagcgttggatgattaaagctttaggtgggacctacctg
acgagacaccagctacctctgaagttggcctgggccatctccattcacaagagtcagggc
atgtcgctagactgtgtggagatctcactggcacgggtatttgaaagcggacaggcatac
gtggctctctcgcgtgcgcgaagcctggaaggtcttcgagtgatggactttgacagcaga
gtggtccacgcgaacactgacgtcctacgtttttatagcagattaaaaaaggaacgggtc
ctgatgcagtccacgctggatagtcacattgaaatggaagatcaggaaaaccggattcct
ggaagattgtag
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