Scyliorhinus canicula (smaller spotted catshark): 119964619
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Entry
119964619 CDS
T11175
Symbol
frem1b
Name
(RefSeq) FRAS1-related extracellular matrix protein 1b isoform X1
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04512
ECM-receptor interaction
scau04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119964619 (frem1b)
04518 Integrin signaling
119964619 (frem1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
scau04091
]
119964619 (frem1b)
Lectins [BR:
scau04091
]
C-Type lectins
Lecticans
119964619 (frem1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Lectin_C
Cadherin_4
Calx-beta
UL45
Motif
Other DBs
NCBI-GeneID:
119964619
NCBI-ProteinID:
XP_038650269
LinkDB
All DBs
Position
4:61882733..62227562
Genome browser
AA seq
2153 aa
AA seq
DB search
MFLSLLALVSSCIQHTEADGLVHLNGGIIVGRGQYTYVTDNDLQFNIPKIKDSCKVEVVL
NEPITQRVGKLTPQVFDCHFLPHEVKYTHNGCPLLEEDNVMLRIYRFTESQTSLETFLLN
VQITEPKSSLIKFGLVSLQVQKFYGISNPIDKNVVSFKYNTNSICTVKVFSTEALVPAHG
QLIVDDPRYRPENLLDTALKQNVRKVRQATIPCPTNKACPTGVKEVRFLKTNCEDFLAMG
LKYQHLSPPSPDNDYIPIRVEVRDERTRFLHQAENAWIRVNIKGAIPNQQPKAAFMSMYI
LEVDQFILTPLSIAAVDAQDDETPKDRLVFNITKPPVEGYLTHLDDHTKSITSFSWQDLH
EMKIAYQPPNISHTERRNCEVDFQAIDTFFEVSAPIMVHFSIRTAETNAPRVSWNMGLDL
LEGQNRPITWENFQIVDNDNMNAVRLIAVEGLQHGRLTVRGGKGFMCTVKDIKDGVVRYH
HDDSDTTKDYIIFRIYDGKHATRHKFPINILPKDDSPPFLINNLAFELAEGESILIENHM
LLSSDLDSSDDYILYRIIIPPRAGKIVKKTLSDLPGHPVTAFLQRDLFQGLIYYHHFGGE
VFEDSFEFILSDSNEPPNLSDPQITMIHVTPVKDQLPKEVDGTMRYLVVKETEIRHITKN
HLHFTDTESPENELMYIITKPCSFPTNQRTSDAGKIIFTDSTKNMKKDPSVPMLKSFTQH
AVNHMKVAYMPPHGDIGPHPLLVQFVFSVNDQQGGTLSGLVFNITIMPVDNQPPEIFTND
IKAEEGSGCMITADNVMVTDKDTLDEDLRIQMKQKPQHGDIELQGNVMQEGDMFTLDELK
FFQVRYKHDDSETLHDLVVFTATDGFNTADEVLKVKIIPINDEPPELQPHLKSGLQCPEG
EMITITAEYLYATDTDSNDMKLTYIIARSPTYGVIQRNEVTVDKFSQLDIIQGLISYSHT
GGEIGHSSCMDTVTVIVSDAEAGTVDSCCYDGPLPPPVPLHGSLPFYDLNITVMPVNNQP
PTIQIGDMFTVDEASQASLVLECLSATDEDTITEELIFVLESLPQYGYIENTLPSPGYEK
SNAGINIASFSLQHLRAGYINYVQCRHNQMEPTADHFMMSVSDGVHKSKAVPFYVIINPI
NDETPDLHLGNITIIEGDICEIGPRVLNAVDLDIPHDALIFSVIRPPAHGVLLNGIYGND
IATYRQMNAEVLHNLRVHCFSMDELKQGMKLMYLHDDTETLKDSFTIQLTDGKHTVPGTV
HVQIISINDEKPVVLINTGLEVEVGENKVISSVALEAEDKDTPRFKLYYVINTVPLFGQL
QLKTEFEWIHLYPGMNYSQEDVDMNRIWYLHTTIVGSKGQDSFRFHVTDGDNTSPSQNFY
ISLKNMKKGDIVVLTKPVTLKEGDRVTLTTDVLKATDGTGKPEELLFAISVPPAHGQIEY
INYPGVAISSFSQLEVAAQKVCYVHDNSREASTDGFRFFVSNGMTVKNSSMEFNIERTDR
ILPTLVSNKGLQLLDGAMLVISPDNLQLSDPDTPLINLTYIIIQPPQCGNLYLKGNVLSQ
DHFTQLNVNNLDISYKHNAGPSELDHFTFIATDGTNHGFLVNGQMREEPVIFSIQVEHVD
KTSPDILINHSPTIIDNLRDGRFGIYITARNLKASDVDSKDEELIYTILRPPYYGYLEST
TGGYIQGTFTQEEVDRRTVRYIINPSIELTFDSFEFKISDTAGNSNAPKIMELKWSRIEM
SASCYKVCEDIGTLSIKVTRKGYSADPSYVNIKVQGLSATIGRDFTHSSASLIQFDPGVS
MKVWNIFIKDDGLEENNEKLKVELKTPMNAIIGQKDISLVEIVDLRGGSCDRVDLRTSEE
GYISQMDSGVSEPPKASAESPIFNQEGRLLTQPELYWDHNTSPPRGDVPQTDHFLDHHGT
LNGDGVSPVTSRTQLRAIGGGRVIPPSSIQRKNGEIVRTYHGMMPIRIEEKMVPLPPQTS
GWQWSLFPFRLNQRRDLLQKDFPPAVENTQSSSKKDQENQQMECPSGWTQHKKHCYIMNP
ERNATWEGAKMACRQMFHANLVSVHSKKELKWLWNFAGGQPFWIGLIDETGSGKWTWING
RPVTFTNWKKNKSSRLRDIQPSCTLVQGKGKWVTRGCNEKQERYICCTSTLRP
NT seq
6462 nt
NT seq
+upstream
nt +downstream
nt
atgtttctaagtttgttggcactggtaagttcctgcatccaacatacagaagcagatgga
cttgttcatctgaatggagggattatagttggcagggggcagtacacgtatgtgacagac
aatgacctgcagttcaacattcctaaaatcaaagactcctgcaaagttgaagttgtgttg
aatgaacctataacacaacgagttggaaaattaactcctcaggtctttgactgtcatttt
cttcctcacgaagtgaagtacacccacaatggctgccctctactagaggaagataacgtg
atgctaagaatctatagattcacagaatctcagacctctctggaaacattccttttgaat
gtccaaattacagaaccaaaatccagtctcatcaagtttggattggttagccttcaggtc
caaaagttttatgggatatcaaatcctattgataaaaatgttgtgtctttcaaatacaat
acaaactctatttgtacagtaaaggtcttttcaactgaggcccttgttccagcccatgga
cagctaattgttgatgatccgaggtatcgcccagagaatttgctagatactgcattgaag
caaaatgttaggaaagtaagacaggctacaattccatgccccaccaataaggcttgccca
actggtgttaaggaagtgcggttcttaaagaccaactgtgaagatttcctagcaatgggg
ctgaaatatcaacacctcagtccaccctctcctgataatgactatattccaattagagta
gaggtcagagatgaaaggaccagattcctccaccaggcagaaaatgcttggattcgagtt
aacattaaaggtgcaattccaaatcagcaacccaaagctgctttcatgtcaatgtatata
ctggaagttgatcaattcatcctgacaccattgagcattgcagctgttgatgcacaggat
gacgaaacaccaaaggacagactagttttcaacatcaccaaaccgcctgttgaagggtac
ttgactcacctggatgaccacaccaaatccatcacatcattcagctggcaggatttacat
gaaatgaaaatagcatatcaacctccaaacattagtcatactgaaagaaggaattgtgag
gttgattttcaggcaatagacacatttttcgaagttagtgctcccatcatggttcacttt
tcaatcagaacagcagagacaaatgcaccaagggtttcttggaatatgggtctggacttg
ttagaaggtcaaaatcgaccaattacttgggaaaattttcagatagtggacaatgataat
atgaatgcggtacgtttaatagcagtggaaggattgcaacacggacggctcacagttaga
ggtggcaaaggattcatgtgcaccgttaaggacattaaggatggcgttgtacgttatcac
catgacgatagtgatacaaccaaggattatattatattccgaatctacgatggcaaacat
gctactagacacaagtttccaattaacatcctacccaaggatgacagccctcccttctta
attaacaaccttgcttttgaactagcggaaggagaatctatattaatagaaaaccatatg
ctactgtcttctgatttggattctagtgatgattacatattgtacaggattataattcca
ccaagagctggcaagattgtgaaaaaaactctatcagatctaccagggcatcctgtgact
gcatttctgcaacgggatcttttccagggtctgatttattatcatcattttggaggcgag
gtttttgaggattcatttgagttcattctatcggatagcaacgagcctcccaatctttca
gacccccagataacaatgattcatgtaaccccggtgaaggaccagttgccaaaagaagtt
gatggcaccatgcgttatttggtagtgaaagaaacagaaattcgacacatcactaagaat
catctgcacttcacagacacagaatccccagagaatgaactgatgtacattatcactaaa
ccttgttccttcccaacaaaccagagaacgtctgatgcaggcaagataattttcacagac
agtacaaagaatatgaaaaaagatccatctgtccccatgctgaaatcatttacacagcat
gcggtgaaccacatgaaagtagcatacatgcctcctcatggcgatatagggcctcatccg
ttattggtgcagttcgtgttttctgtcaatgatcagcagggcggcactttgtctggactt
gtctttaacatcaccatcatgcctgtggacaaccaaccacctgagattttcaccaatgat
ataaaagctgaggaaggttcaggctgcatgatcactgcagataatgtgatggtgacagat
aaggatacacttgatgaagatctccgaattcagatgaaacaaaaaccgcagcatggagat
attgaacttcaaggaaacgtcatgcaggagggtgatatgtttacactcgatgaactcaaa
ttctttcaagtcaggtacaaacatgatgattcagaaacactgcatgatttagttgtgttt
acagccacagatggatttaacactgcagatgaggtgttgaaagtaaagattataccaatc
aatgatgaacctccagagctacagccacatttaaaatctggcctgcaatgtcctgaggga
gaaatgatcaccattaccgcagagtacctttatgctacagatactgacagtaatgacatg
aagctgacatatataatcgctcgttcaccaacatatggagtgatacaaagaaatgaagtt
acagtcgacaaattttcacaactggatatcatccaagggttaatctcctattcgcacact
ggcggtgaaataggacacagttcttgcatggacactgtaacagtaattgtctctgatgca
gaagcaggtacagtggatagctgctgttatgatggacctcttccaccaccagtgccactc
catggctctctgcctttctatgaccttaacatcactgtaatgccagtcaacaatcaacct
cctacaattcaaattggcgatatgtttacagtggatgaagcatcacaagccagtttggtt
ttagaatgtctgtctgccacagacgaagacaccatcacagaggaactaatctttgttttg
gagagtttgccccagtatggatacatcgagaacacactcccatcaccaggatatgagaag
agcaatgctggaataaatatagcttccttcagtctgcagcacctcagggcaggctacatt
aactacgtccagtgcagacataaccagatggaacccacagctgaccactttatgatgtct
gttagcgacggtgtacataaatctaaagcagtgccattttatgtcatcatcaacccaatc
aacgatgaaactccagatttgcatctgggaaacatcactataattgagggtgatatctgt
gagattggccctcgagtgctgaatgcagttgatctggatatacctcatgatgcactgatc
ttctctgtgattagaccacctgcccatggagtgctcttgaatggcatctatggaaatgat
attgccacatacagacagatgaatgctgaagtactacacaatctgagagtacattgcttc
agcatggatgaactcaaacaaggaatgaagctaatgtacctgcatgatgacacagaaacc
ttgaaggatagttttaccattcaactgactgatggcaagcacacagtaccagggacagta
catgtccaaattatatcgatcaatgatgagaagccagttgttttaataaacactggcttg
gaagtggaagtgggagaaaacaaagttatttccagtgtagctttagaagctgaagacaag
gacacaccacggttcaagctttactacgtaatcaacactgtgcccctatttggacagctg
cagctaaagactgaatttgaatggattcatctatacccaggcatgaattatagtcaagaa
gatgtagacatgaaccgaatttggtatctacacactaccattgtggggtcaaaaggtcag
gacagctttcgcttccatgttacagatggggataacacctcaccttcacagaatttttat
atctcactaaaaaacatgaagaaaggtgacattgttgtactcaccaaacctgtaacttta
aaagagggtgacagggtcaccttgacgacagatgttctcaaggcaacagatggcactggc
aaacccgaagagctgttattcgccatctctgtgccacctgcacatggtcagatcgagtac
atcaattatcctggagtggccatttccagtttcagccagttggaggtagcagcccagaag
gtctgctatgtccatgacaacagtcgtgaggccagcacggatggattcagattttttgtc
agcaatgggatgacggttaaaaacagttccatggaatttaacattgagcgcactgaccgt
atcctgcccactttagtcagtaataaaggtcttcagttactagatggggccatgttggtc
atctctcctgataatcttcaactctcagatccagacactcccctgataaacctaacctac
attattatccagcctcctcagtgtggcaacctgtacctgaaaggaaatgttctttcccag
gaccacttcacacagttgaatgtgaataatttggacatttcatacaaacacaatgctggg
ccctctgaacttgaccactttacattcatagctactgatggaaccaatcatgggttttta
gtcaatggccagatgagagaggagcctgttatattcagcatacaggtggagcatgtagac
aagacatctcccgacatcctcatcaatcacagcccaactataattgacaatctgagagat
ggacgttttggtatctacatcactgcccgtaatttaaaagcctcagatgtggacagcaaa
gatgaggagctgatttatacaattctccgtccaccttactatggatacttggaaagtaca
acaggtggatacattcaaggcacatttacccaggaagaggtggatagacgtacagttcgc
tatatcatcaatccctccatagaactgacatttgacagttttgagttcaaaatatctgac
actgcaggaaactcaaatgcaccaaaaataatggaactgaaatggtccaggattgaaatg
tctgcaagttgctacaaagtctgtgaagacatcggaactctctccattaaggttaccaga
aaaggatacagtgctgatccctcttatgttaatataaaggtccaggggttatcagctaca
attggtagagacttcacccatagctcggcaagtttaattcagtttgatcctggtgtttct
atgaaggtatggaacattttcattaaagatgatggacttgaagagaacaatgaaaagttg
aaagtagagctaaagacaccaatgaatgccatcattgggcagaaggacatctctttggtg
gaaattgtagatttgcgtggaggcagctgtgatcgagtggatttgagaacaagtgaagag
ggttatatcagtcagatggacagcggtgtaagcgaacctccaaaggcatctgccgaatcg
cccatattcaatcaggaaggaagattattgacacagcccgagctgtactgggatcacaat
acctcccctcctaggggtgatgttcctcagactgatcattttttggaccaccatggaaca
ctgaacggagatggtgtttctccagtgacatccagaacacagcttcgggccattggaggc
ggcagagtgattcctccctcttcaattcagaggaagaatggggagattgtgaggacatac
cacgggatgatgccaatacgaattgaagaaaaaatggttcctctccccccacaaaccagt
ggatggcagtggtctctgttcccattccgcttaaatcagagacgtgatttgctccaaaaa
gacttcccaccagcagttgaaaatactcaatcatccagcaaaaaggatcaggaaaatcaa
caaatggaatgcccttcaggctggacccagcacaagaaacattgttatatcatgaatcct
gagagaaatgcaacctgggaaggagctaaaatggcctgtaggcaaatgtttcatgccaat
ttagtcagtgtgcattccaagaaggaactgaaatggctttggaactttgctggggggcag
ccattctggattggcttaatagatgagactggttctggaaaatggacatggattaatgga
agaccagtaacctttacaaactggaagaaaaataaatcttcacgattgagagatattcag
ccgagctgtactcttgtccagggtaaaggcaaatgggtgaccagagggtgtaatgaaaaa
caggagcgatatatctgctgcacctctacattgagaccttaa
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