Scyliorhinus canicula (smaller spotted catshark): 119964792
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Entry
119964792 CDS
T11175
Symbol
prpf38b
Name
(RefSeq) pre-mRNA-splicing factor 38B isoform X1
KO
K12850
pre-mRNA-splicing factor 38B
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119964792 (prpf38b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
scau03041
]
119964792 (prpf38b)
Spliceosome [BR:
scau03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
119964792 (prpf38b)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRP38
Motif
Other DBs
NCBI-GeneID:
119964792
NCBI-ProteinID:
XP_038650709
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Position
4:90608204..90646623
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AA seq
546 aa
AA seq
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MANKTAIGNHQQQQQQAGGSVKPASSIKQGNVLPLWGNEKTMNLNPLILTNILSSPYFKV
QLYELKTYHEVVDEIYFKVTHIEPWEKGSRKTAGQTGMCGGVRGVGTGGIVSTAFCLLYK
LFTLKLTRKQVMGLITHTDSPYIRGLGFMYIRYTQPPADLWDWYEPFLDDEEELDVKAGG
GCVMTIGEMIRSFLTKLEWFSTLFPRIPVPVQKNLDQYLKTRPRKIAKKDGKDSMEEPER
LSERRHSRSPRRSLTPRKSPRRSRSRSRHREGHGSFGFDKELERERERQKREREQIKDRE
RSEKDRHKSRSTDRGLDRRRSRSRDHHRSRSRDKRSDKKDRDKEREKENERSRRREKDYE
KDKEKVSDRDRERNVEKESERSKDRDKRSQLKTEDRKRKEERREKDEKRHKDDKKESKKD
KRHSRSKSREKRHRSSSPGRGCVSKRSRSKSKEKSKHRNEHKEKSNKRSISKERTDENDG
EQIKKQRSHSKEKAHKRSRSKERSHKQSHGDGKDHSSKPSHRSLSTERDDKSNADVLLQG
NTTDDD
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atggctaacaaaacggccattggaaaccaccagcaacagcagcagcaagcggggggaagt
gtcaagccggcttcctccatcaaacagggtaacgtgctgccgctgtggggcaacgaaaag
accatgaacctcaacccgctcattctcaccaatattctctcctcgccctacttcaaagtg
cagctgtatgaactgaaaacctaccacgaggtggtggatgagatctacttcaaggttact
catattgaaccatgggaaaaggggagcaggaagactgcaggccagacaggcatgtgcgga
ggggtacggggtgttggaacgggaggcattgtttccactgccttttgtctactgtacaag
ttgtttaccctgaagttaactcgtaaacaggtgatgggcctaataacacatactgactct
ccgtacatccgaggtttaggcttcatgtatatacggtacacacagcccccagctgatttg
tgggattggtatgaaccttttttagatgatgaagaggagctagatgtaaaagctggagga
ggatgtgtcatgacaataggagagatgattcgttctttccttactaaactggaatggttc
tctaccttattcccaagaatcccagttcctgttcaaaagaatttggaccagtatctcaaa
actcgaccaaggaaaattgctaaaaaggacgggaaggatagtatggaagagccagaacga
ctttcagagcgccgacattcgaggtcaccaagaagatctcttactccacgcaaatctcct
agacgatctagaagcagaagtcgtcatagagaaggccatggatcttttggttttgacaag
gaattagaaagagaaagagaacgacagaaaagggaaagggaacaaattaaagacagagag
cgaagtgagaaggataggcataaatctagaagcacagatagaggcttggaccgcaggcga
agcagaagcagagaccatcacagaagtcgaagcagagataaaaggagtgataaaaaggat
agagataaagaaagggagaaggaaaatgaaagaagcagaaggcgagaaaaagattacgag
aaagacaaagaaaaagtgagtgatagagatagagaaaggaatgttgagaaagaatcagag
agatctaaagaccgggataaaagaagccaattaaagacagaagacagaaaacgtaaggaa
gaaagaagagaaaaagatgaaaagaggcataaagatgataaaaaggaatcaaaaaaagat
aaaaggcatagtcgaagcaagagcagagagaaaagacacagaagcagtagtcctggcagg
ggatgtgtcagcaaacgtagtagaagcaaaagcaaagagaaatctaaacaccgcaatgaa
cataaagaaaaatcaaacaaaagaagtattagcaaagaaaggactgatgagaatgatggt
gaacagataaagaagcagcgtagtcatagcaaagagaaagctcacaagcgcagtcgaagc
aaagagcgatctcacaaacaaagtcacggtgatggtaaggaccattcaagcaaaccaagc
cacagaagtctcagtacagaaagagatgataaaagcaatgcagatgtattgttgcaaggc
aataccactgatgatgactga
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