Scyliorhinus canicula (smaller spotted catshark): 119964927
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Entry
119964927 CDS
T11175
Symbol
gtpbp3
Name
(RefSeq) tRNA modification GTPase GTPBP3, mitochondrial isoform X1
KO
K03650
tRNA modification GTPase [EC:3.6.-.-]
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
scau03016
]
119964927 (gtpbp3)
Transfer RNA biogenesis [BR:
scau03016
]
Eukaryotic type
tRNA modification factors
Other tRNA modification factors
119964927 (gtpbp3)
Prokaryotic type
Methyltransferases
119964927 (gtpbp3)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MnmE_helical
TrmE_N
ADH_zinc_N
MMR_HSR1
ADH_N
ADH_zinc_N_2
FeoB_N
RsgA_GTPase
SRPRB
Dynamin_N
ABC_tran
MMR_HSR1_Xtn
MCM
Motif
Other DBs
NCBI-GeneID:
119964927
NCBI-ProteinID:
XP_038651039
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Position
4:complement(120264827..120319888)
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AA seq
842 aa
AA seq
DB search
MGRVAVLRLCRDAVRCNNLSRKSSGLARIHTTSTTDSGHSYQAVLCTKLKKPLVIQQLPS
VALKPTEVRVNVHCCGVNFADLLICQGLYQHRPPIPFTPGMEFAGCVLEVGPNVTSIHKG
DRVIGVSSTGAMAEQCVVDHEMLWPIGEELPYEVAATLPVSYGTAILALQQRAKTQPGET
VLVTAAAGAAGLAAVDFASHVLKAKVIAAAGTDEKCELAVQKGAAVAINYTTKSVKEEVK
KLTADKGVNVVLDTVGGDIFKEAFSSLAWEGRIVVVGFAGGNIPTVPANQLLLKNVTAMG
IYWGKYQYEDFPIFSRSIVSAIQYCQEGRTKPHIGAVYKLQQVLEKDRHIPYHRGRQCNF
QSSFVRMQCSDSRERSTIFAMSSGQGRCGVAVIRVSGPASRDTLICLTGQRALPPARAAA
LRPLLDPRSGERLDMGLVLWFPGPRSFTGEDCCEFHVHGGSAVVSGVLQALGYLPGLCPA
QAGEFTKRAFQNGKLDLTEVEGLGDLIHAETEAQRRQALRQMAGDLGHLYHGWSKRLTRC
LAHTEAYIDFSEDDNIEEGVLDKVDNDVHALQSEIDRHLHDSRQGERLRDGVHVTIVGAP
NAGKSSLMNLICQKPTAIVSPIAGTTRDVLETTLNIGGYPVLLSDTAGLRETSDMVEQEG
VRRARERLQLADIVLVMVDATELPSDLTGMVQFLQDYLSEVMGAPDKDADWIVVCNKTDL
VLLEELNKLHLVLKDHGLPRMCLLSCTTGSGFDDFLHLLVEQVEKMCGNPLAGSPSLTQA
RHRLHLQNCSHALTQYHQQREMDLVLATEQLRTGLRQLGKITGTIGAEEILEVIFRDFCI
GK
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atggggcgagtggcggtgctcaggctctgcagggatgccgtcaggtgcaataatttatca
aggaaatcaagtggactggcaaggatacacaccactagtaccacagattctggccattca
taccaagcagtactgtgcaccaagctgaagaaacctctggtgatccagcagctgccttca
gttgcactcaagcccaccgaggtgcgggtgaatgttcattgctgtggggtgaactttgct
gatcttctgatatgccagggcctttatcagcaccgacctccgattcccttcactccagga
atggaatttgcagggtgtgtgctggaggttggtccaaatgtcacatcgattcacaaggga
gaccgtgtgataggtgtgagttccaccggggcaatggcagaacagtgtgttgttgaccac
gagatgctgtggcctatcggagaggagctcccctacgaggtggccgctacattaccggtt
tcatatggcacggcgatcctggccctacagcagcgagcaaagacacagccaggggagacc
gttctggtgacggcagcagctggtgcagcaggacttgcagctgtggattttgcatctcat
gttctgaaggccaaggtcatcgcagctgcaggaactgatgagaagtgtgaactggccgtg
cagaaaggtgctgcggtggctatcaattatacaacaaagagcgtgaaggaggaggtgaag
aaactgacagcagacaaaggggtgaatgtggtactggataccgttggaggagatatattc
aaagaagctttcagcagcttggcgtgggaaggcaggattgtggtggtcgggtttgctggt
ggaaatataccaactgtgccagccaaccaactgcttctgaagaatgtgacggcgatgggc
atttactggggaaaatatcaatatgaagatttccccatcttctccaggtccattgtgtct
gcaatccaatactgtcaggaggggagaaccaaaccgcacattggagcagtctataaacta
cagcaggtactggagaaggataggcacattccatatcaccggggacgtcagtgtaatttc
cagtccagctttgtgaggatgcagtgttcagactctcgagaaagaagcacgatttttgcc
atgagctcgggccaaggcaggtgtggggttgccgtcatccgagtgagtggtcctgccagc
agggacacgctgatctgcctgactggtcagagagctcttcccccggccagagctgctgct
ctccggccactgctggaccccaggtctggggagcggctggacatggggctggtgctgtgg
ttcccaggcccccgcagtttcactggagaagattgctgtgagttccatgtccatggggga
tcagcggtggtcagcggagttctccaagctctgggatacttacctgggctatgcccagcc
caagctggggagttcaccaaacgtgcctttcagaatgggaagctggacctgacggaggta
gagggactgggggacctcattcatgctgagacggaagcccagagaagacaagccctacgg
cagatggctggtgacctggggcacctgtatcatggctggagtaagaggctaacccgatgt
ctggcccacacagaagcctacattgatttcagcgaagatgacaacattgaggagggggta
ctggataaagttgacaatgacgtgcatgcgttacagagtgaaatagataggcacctgcat
gacagtcgccaaggtgaaaggctgagggacggcgtccatgtgaccattgttggagcaccc
aatgctggaaaaagcagcctcatgaatttaatttgtcagaagcccactgccatagtctcg
ccgatagcagggacaaccagggatgttttggagacgaccctgaacatcggaggctacccc
gttcttctgagtgacacagcgggactgagggagacctctgacatggtagagcaagagggc
gtgaggcgtgctcgggaaaggcttcagctggcagacattgtgcttgtgatggtagatgcc
acggaactgccatcagacctgactggaatggtccagtttcttcaagattatctgagtgaa
gtgatgggtgcgcctgacaaggacgcggactggattgtggtttgtaataagacagatctt
gtactgctggaagagttgaataagctgcacctagttctgaaagatcatggccttcctcgg
atgtgcctgttgtcatgcacaactggcagtggtttcgatgacttcctacatctccttgtt
gaacaagttgaaaaaatgtgtgggaatccgttggctggcagccccagtttaacacaggca
cgtcaccggctgcacctccagaactgcagccatgccctaacacagtatcaccagcaacgt
gagatggatcttgtcctggccacagagcagctgagaacaggattgagacagctgggaaag
atcactgggacaattggagccgaagaaatcctggaagttatattcagggatttctgcatt
gggaaataa
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