Scyliorhinus canicula (smaller spotted catshark): 119965001
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Entry
119965001 CDS
T11175
Symbol
tnr
Name
(RefSeq) LOW QUALITY PROTEIN: tenascin-R
KO
K06252
tenascin
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04510
Focal adhesion
scau04512
ECM-receptor interaction
scau04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119965001 (tnr)
04518 Integrin signaling
119965001 (tnr)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119965001 (tnr)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
scau00536
]
119965001 (tnr)
Glycosaminoglycan binding proteins [BR:
scau00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119965001 (tnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_TEN
EGF_Teneurin
Fn3_Dep-1_3rd
FN3_DSCAM-DSCAML_C
Pur_ac_phosph_N
Fn3_Dep-1_2nd
EGF_Tenascin
EGF_2
Fn3_VIN3
FN3_Tor_3rd
DUF7949
fn3_2
REJ
Motif
Other DBs
NCBI-GeneID:
119965001
NCBI-ProteinID:
XP_038651119
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All DBs
Position
4:complement(130913130..131303607)
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AA seq
1334 aa
AA seq
DB search
MLMMLLVVLAVCLSTLLDPGECRLLVSALRRKRDEASARSHHINRTVPVKQQSIVFNHVY
NINVPAESLCSVTMESSSEQSGSLKGEYATQNYQPNLDTQVAFTHNINMPKQMSECPHAT
LLENIISRLNILEREFSILRQQCSGNCLGESSASGRIDYAPMCNGHGNFSMETCDCSCEF
GWTGKGCLVQCCPSNCSGRGQCVDGECVCDRGYTGQDCSELRCPRDCSGHGLCVDGQCVC
EEPYKSEDCGQLKCPRECSGHGQCINDSCLCYEAYTGEDCHQKRCLNDCSNKGLCNHGVC
SCQAGYTGEDCGEVFPPQSLRATGVTDHTIALEWESSVKITEYLITYISSIPDGLLSELR
VPGNWTAASITGLDPGVEYNINVYAVLNNKLSAPINSQITTHLPTPQDLHFKSLSETAVV
VQWDPLHVPIDGWEISFIAKSNEGGMVVQLPSTVTSFNQSGLRPGEDYTVNLVALKEKMR
STPATTTVSTLIDGPNQITIREVADTFAFVEWTPPRAHVDHVLLSYGLASGASEKTTLRL
QPTLSQYSLQNLRPASLYQVSVTGIHEHGQSQSITAAFTTEIDAPRNLRVVTPGDSRLEL
EWENSQADIDRYRVVYSTLAGRKYHELIVPKSTGPTSKVTMTDLLPGTEYGIGISAIKET
KQSVPATMNARTDLDRPLGLTVTASSNTSISLTWTEIRGPVDHYRVTHTTASGVSSEVMI
TSGSHSVTFNNLEPHRKYNVSVVAERGWQQSYPSTIEGMTGPYSIEELIFSDINASSVNV
SWQRPTPAADIFILHYTPRNNGGTMHVTVAGTETDTILSNLKPGEEYIVTLVAIQGTFTT
EPVLGTFVTALDPPKGILFANISDDSLTVMWRRPVADFDHYQMLYQPLSVQSGPVESVKI
EPNQTEYILTDLQPATEYEVILNTVRGMKESQHVSNMIQTAMDKPLAVQVVNMTPTEAVL
DWIAPQAIVENYVIVLTHNEVVADTVLADGATTRFQLRNLHPLTNYSVTVYAVRGSMTSA
SVFINFLTPLDPPRNLSVSDVSRRSAMISWQPSKAEIENYVLVCEDSSGQRKELILDAED
TWIQLEGLSEMTTYSLRLQSAHGAMRSAAENTSFTTVGRLYPYPWDCAQHLLNGDTISGI
YTIYINGEPQQSLQAFCDMMTDGGGWTVFQRRQNGLTDFAQKWADYRVGXGNLEDEFWLG
LDNIHKISAQGRYELRIDLRDGRESVYAAYDRFYLSDSRNLYKLRLGDYNGTAGDSLSYH
QGRPFSTKDRDNDVAITNCASSYKGAWWYKNCHRANLNGKYGENRHSQGYKLVPLERSRN
LHSVCGDEDATVMI
NT seq
4005 nt
NT seq
+upstream
nt +downstream
nt
atgctgatgatgctgctcgttgtcctggcagtttgcctcagtactctgctggatccaggc
gagtgtcggctgctggtcagtgctctccggcgtaagcgcgatgaagcctcagctcggagt
caccatattaaccgcacggtgccagtcaaacaacagtctattgtctttaaccacgtctat
aacatcaatgtgcctgccgaatctttgtgttcagtgacaatggagagttcttcagaacaa
agcggatctctaaagggtgaatacgccactcaaaactaccaacccaacctggacacacag
gtagctttcactcataacatcaatatgcctaaacagatgtcggagtgcccacatgctacc
ctgcttgagaacattatcagccggctcaacatactcgagcgagagttctccatcctcaga
caacaatgcagcggcaactgcttgggagagagctcggcctcaggtcggattgactacgcc
cccatgtgcaacggacatggaaacttcagcatggagacatgtgactgcagctgtgagttt
ggatggactggtaaaggttgcttggtgcaatgctgcccatctaactgcagcgggcgtggg
cagtgtgtagatggagagtgcgtctgtgatcgagggtatacagggcaggactgcagtgag
ctgagatgtcccagggattgcagtgggcatggcctgtgtgtggacggacagtgtgtctgt
gaagaaccttacaaaagtgaagactgcggacagctgaagtgtcccagagagtgctcagga
catgggcagtgcattaatgatagctgcctttgctatgaggcctacactggagaggactgt
catcagaagaggtgcttgaatgattgtagcaacaaggggctttgtaaccatggagtttgc
tcctgtcaggctggctacacaggagaggattgtggagaagtgtttccacctcagagtctc
cgagcgactggtgtcactgatcacaccattgcgctggagtgggagagctctgtgaaaatc
actgagtatctcatcacctacatttccagcattccagatgggttactctcagagctccgt
gtcccggggaactggactgcagcgagtatcacaggattggaccctggagtcgaatacaac
attaatgtctatgccgtgctgaataacaagctgagtgcgcccatcaactcacagattacc
actcatctgcccactccacaagaccttcatttcaaatccctctccgagacagcagtggtg
gtgcaatgggatcctcttcacgttccgattgatggctgggaaatcagttttattgccaag
agtaatgaaggggggatggtcgtgcaacttcccagcactgtcacgtcttttaatcagtca
ggcttgaggcctggtgaggattacaccgtgaacttggtcgcactcaaagagaagatgagg
agcacaccagcaacaacaacggtgtcgaccctgattgatgggccaaatcagatcaccatc
agggaggtggctgatactttcgcctttgtggaatggacacctccaagagcccatgtcgac
catgtgctgctgtcgtatggactagccagtggggcgagtgagaagaccacgctgagactg
cagcctactctgagccaatactccctgcagaatctcagacctgcgtcactgtaccaggtg
tcagtcactggcattcatgagcatggacagagccaatctataactgcagcctttaccaca
gagattgatgctcccagaaacctgcgcgtggtaacaccaggggacagcaggctggagctg
gagtgggagaacagtcaagctgacatcgacaggtacagggtggtctacagcacactggca
ggcaggaagtaccatgagctgattgtgcccaaaagcacagggccaacaagcaaagtaacc
atgactgatttattgccaggcactgagtatggcataggaatctctgccattaaggagacg
aaacaaagtgttccagccaccatgaacgcaagaactgatttggaccgtcctcttggcctg
actgtgacagcctcttccaataccagcatctccctcacgtggactgagatccgaggtcct
gttgatcactatcgggtcacccataccacagcctcgggtgtgagttcggaggtgatgatc
acgagtggtagtcactcagtgactttcaataacctggagccacacagaaagtacaatgtg
tctgtggtggcagagcgaggctggcagcagagctatccatctaccattgagggcatgaca
ggtccatactcaatcgaggagttgatattctctgatattaatgcgagcagcgtcaatgtg
tcctggcaacggccaacacctgcagctgacatctttatcctacattacactccccgaaac
aatggggggacaatgcatgtgacagtggccggaactgagacagacactattctgtccaac
ctaaaacctggtgaagaatatattgttacactagtggcaatacaggggacattcactacg
gaaccagtgctgggaacgttcgtcacagccttggatccacctaaaggcattttgtttgcg
aacatatctgatgactcgctgacggtgatgtggaggagacctgtggcagactttgatcat
tatcagatgttgtaccagcctctatctgtccagagtggtccagttgagagtgtgaaaatt
gaacccaatcaaaccgagtatatactgactgacctccagccagcaactgagtatgaagtg
attttaaacacagtgcgtgggatgaaagagagtcagcacgtctcaaacatgattcagaca
gctatggataagccacttgccgtgcaggttgttaacatgactcccaccgaggccgtactt
gactggattgcacctcaggctatcgtggagaactatgttattgtcttaactcacaatgaa
gttgttgctgacactgtccttgctgatggggcgaccacacggtttcaactgcgaaatctt
cacccgctcaccaattactctgtcactgtctacgctgtcagagggtccatgaccagcgcg
tctgtcttcataaatttcctcactcctctggatcctccacgaaacctgtccgtcagtgat
gtgagtcgaaggagcgccatgatttcctggcagccctccaaggctgaaattgagaactat
gtgctggtgtgcgaggacagcagtggacagcggaaggagctgatactggatgcagaggat
acttggattcaactggagggcctgtcagaaatgactacgtactctctgagactccagtcc
gcacacggcgccatgagaagtgcagcagaaaacacctcattcacaacagtgggcaggctt
tacccgtacccatgggactgcgctcagcacctacttaatggagacaccatcagtggcatc
tacaccatctacatcaatggagagccacagcaaagcctgcaagctttctgtgacatgatg
acagacggtggtggttggactgtgttccagagacggcagaatggactgacagactttgca
cagaaatgggctgattaccgagtggganttggaaacctggaggatgaattctggctgggt
ttggacaacattcacaagatctctgcacaaggcagatacgagctccgcatcgatctccgt
gatggccgtgaatcagtgtacgcagcctatgatcgattttacctgagtgattccaggaac
ctatacaaattgagactcggagattacaatggaacagccggggactcactatcctatcat
cagggacgcccattttccaccaaggatcgggacaatgatgtagctatcacaaattgtgcc
tcgtcttacaagggagcctggtggtataagaactgtcaccgtgccaacctcaatggaaag
tacggagagaatcgacacagccagggttataaactggtaccactggaaaggtcacgaaat
ctccattccgtttgtggagatgaagatgcgaccgttatgatctga
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