Scyliorhinus canicula (smaller spotted catshark): 119965055
Help
Entry
119965055 CDS
T11175
Name
(RefSeq) transcription factor SOX-30-like isoform X1
KO
K09271
transcription factor SOX15/30
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
scau03000
]
119965055
Transcription factors [BR:
scau03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
119965055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
119965055
NCBI-ProteinID:
XP_038651221
LinkDB
All DBs
Position
4:143531723..143707150
Genome browser
AA seq
586 aa
AA seq
DB search
MITMEASPNKAIQSENKFVSGLNSRKDFGDQNIAGQHVTEKIKLEDDEHYKPGCSRGAQQ
TKDLLFLKDLNGTDGSQHSDLKLPITLHPLPPGIKLQLQGSSSTCDVVKFAKLSGPLTSN
NLGDIRLQTQVDPSLKINTINVPLTVPPTEAEINDMPPSKDRSGHIKRPMNAFMVWARIH
RPSLAKANPNANNAEISVQLGLEWNKLTEEQKKPYYDEAQKIKEKHREEFPGWVYQPRPG
KKKRFALGVPSNVFPGSGQNIVSTTPATIYPYRPATYSVVIPNLQTNVNRPSVIAGQSQS
LRMPVAQGPRPNSIILYPQTNPVQVGLPTQSISSHPTVPATCPPGHSRNEVHHEVPGPSA
VSNCSEQRIPTMSVDVGKRNSTNETNNTHNRSTIPEVPAQKEIPTVSSCPRNPPPMPSAT
LPHPHAYQHPPMGHAANLFGAAARFPFHHPYFLPGPPYFPSSTCPYSRPPYGYGDFANSM
SECLGYYEDRYQKHEAMFSALNRDYPFREYPDDCQRNTDSRSNSSIEEGPHSNSLGGEEY
LNSVPQLDVGALENVFTTPMSAPTQPQRVEMVHSDDEQEGKVLKSL
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgatcacaatggaggcatctccgaataaagcaatccagagtgaaaataagtttgtttca
gggttaaactcaagaaaagactttggtgatcaaaatattgctggccaacatgtgactgaa
aaaataaaattagaagatgatgagcattataaacctggttgcagcagaggcgctcaacag
actaaagatttattgttcctgaaggatctaaatgggaccgatgggtcgcaacatagcgat
ctgaaacttcctataactttacacccacttccacctggaatcaaacttcagcttcaagga
tcatcgtccacatgtgacgtggtcaaatttgccaaattatctggaccactaacatcaaac
aatctgggcgacatcaggttacaaacacaagtggatccatccttgaagatcaatactata
aatgttccccttactgtccctcctacagaagcagaaatcaatgatatgccaccctccaaa
gatcgaagtggtcacataaaacggccgatgaatgcatttatggtttgggcacggattcac
agaccatcattagccaaggcaaaccccaatgctaataatgctgaaattagtgttcaactt
ggcctggagtggaacaagctgactgaagagcagaagaaaccctactatgatgaagcacaa
aagataaaagagaaacacagggaagaatttcctggatgggtataccaaccacgaccaggg
aagaaaaaacgctttgcactgggtgttccttcaaacgtctttcctggaagtggtcaaaat
attgtttcgacaactccagcaaccatttacccctatcggcctgccacatactcagtggtt
attccaaatttacagactaatgtcaaccgtccatcggttattgcaggtcaaagccagtct
ctgcgcatgccagttgctcaaggtcctcgtccaaattcaattatactttatccacaaaca
aatcccgtgcaggttggcctgcctacgcaaagtatatccagtcaccccactgtgccagcc
acctgtcctccaggacacagtagaaatgaggtccatcatgaggttcccggtccaagtgca
gtgtcaaattgttcagagcaaaggatacctacgatgtcagtggatgttggcaaaaggaat
tctaccaatgaaactaataacacacacaacagaagtaccatacctgaagtcccagcacaa
aaggagatacccactgtttccagctgccccagaaatccaccaccaatgccttcggcaacc
cttccacatccacatgcttaccagcatccaccgatggggcatgctgctaatttgtttgga
gctgctgcccgatttccttttcaccatccttatttcttgcctggaccaccctatttcccg
tcaagtacttgtccttacagtagaccaccctatggttatggcgattttgcaaacagcatg
tctgaatgcctgggctactacgaggaccgataccagaagcatgaggctatgttctctgcg
ctgaatagagattacccttttagggagtatccggatgactgtcaacgcaacacggactcc
aggagcaatagcagcatcgaggaaggaccccactcgaacagccttggaggagaagagtac
ctgaattccgtgccacagttagatgttggagcactggaaaatgtcttcacaaccccaatg
tctgctccaacacagccacaacgagtggagatggtccacagtgatgatgaacaagaaggc
aaagtattaaaaagcctgtag
DBGET
integrated database retrieval system
