Scyliorhinus canicula (smaller spotted catshark): 119965250
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Entry
119965250 CDS
T11175
Name
(RefSeq) CCR4-NOT transcription complex subunit 6
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119965250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scau03019
]
119965250
Enzymes [BR:
scau01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
119965250
Messenger RNA biogenesis [BR:
scau03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119965250
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
119965250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_14
LRR_1
LRR_6
LRR_LRWD1
LRR_R13L1-DRL21
CdiI
Motif
Other DBs
NCBI-GeneID:
119965250
NCBI-ProteinID:
XP_038651668
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All DBs
Position
4:complement(190303027..190446957)
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AA seq
558 aa
AA seq
DB search
MPKEKYDPPDPRRMYTIMSSEEAANGKKSYWAELEISGRVRSLSSSLWSLTHLTALHLGD
NSLSRIPPDIAKLHNLVYLDLSCNKIRSLPSELGNMVSLRELLLNNNLLRVLPFELGKLF
QLQTLGLKGNPLAQEILGLYQEPDGTRRLLNYLLDNLAGTSKRIQPEQPPPRSWIVLQEP
ERTHPSALFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKSIMQEILNCNADIISLQE
VETEQYFAFFLVELKEHGYDGFFSPKSRARTMSESDRKHVDGCAIFYKTEKFCLIQNHTV
EFNQLAMANSDGSEAMLNRVMTKDNIGVAVLLELQKDSFELSPGKSFHGMEKQLVLIANA
HMHWDPEYSDVKLIQTMMFLSEVKNIIEKASRTLRPGAVTGDLNVIPLVLCADLNSLPDS
GVVEYLATGGVDTNHKDFKELRYSDCLMKFSNIGKNGTPSARITHGFKLKSAYENGLMPY
TNYTFDFKGIIDYIFYSKPHINILGVLGPLDPNWLIENSISGCPHPHVPSDHFSLFAQLE
LLLPFVSPVNGIHLPGRR
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggaaaaatatgatccacctgatccacggagaatgtacacaattatgtcttca
gaagaagcagcaaatgggaagaaatcgtactgggcagaattggagatcagtgggagagtt
agaagtttgagttcatcgttatggtcactaacacacttgactgcattgcatcttggtgac
aactccctttcacgtattcctcctgacattgccaaactgcataatctggtatacttggac
ctatcgtgcaacaagatacggagtttaccgtcagagcttggaaacatggtatcactcagg
gaactgcttttgaacaataacctgttgcgggttctaccatttgagcttggaaagctgttt
caattacagaccctgggtttgaaaggaaatcctttggcacaagaaatccttggtctctat
caggaaccagatggaactcgtaggctactaaattatctgcttgataatttggcaggcact
tcaaaaagaattcaaccagaacagcctccaccaaggtcatggattgtcttacaagaacca
gaacgaacacatccctcagcgttgttctctgtcatgtgctataacgtactatgtgacaaa
tatgccacacgacagctgtatgggtactgtccatcatgggcactgaattgggaatatagg
aaaaaatctataatgcaagaaatcttgaactgcaatgcagacatcataagtcttcaggaa
gttgaaactgaacagtacttcgcttttttcctggttgaacttaaagaacatggctatgat
ggtttcttcagccccaaatccagagccaggacgatgtctgaatctgaccggaagcatgta
gatggctgtgcaatattctataagactgaaaaattttgtctgattcagaaccatactgtt
gaattcaaccagttggccatggcaaactcagatggctcagaagctatgttgaacagagtt
atgacaaaagacaacattggtgttgctgtactcttggagttgcagaaggattcttttgaa
ctatcccctggcaagtcatttcatggtatggaaaagcagcttgttcttattgcaaatgca
catatgcattgggatcctgaatattctgatgtgaaactgatacaaactatgatgttccta
tctgaggtgaagaacataattgaaaaggcttctcgcacacttagacctggtgcggtcaca
ggagaccttaatgtcattcctcttgtactgtgtgcagatctcaattcactgccagattca
ggtgttgtagaatacttggccactggaggagttgatacaaaccacaaggattttaaagag
ctgagatatagtgactgtctaatgaaattcagtaatattggaaaaaatggaacgccaagt
gcaaggatcactcatggctttaagctgaagagtgcctatgagaatggcctgatgccttat
acaaattatacctttgacttcaaaggtattattgactacatcttctactcaaagcctcac
attaacatactgggtgttcttggacctttggatcctaattggctgattgaaaacagcatc
agtggctgtccacatccacatgttccatctgaccatttctcactttttgcacaactggag
cttttactgccctttgtgtcaccagtaaatggtatccatctgccaggcagaaggtag
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