Scyliorhinus canicula (smaller spotted catshark): 119965403
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Entry
119965403 CDS
T11175
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03440
Homologous recombination
scau03450
Non-homologous end-joining
scau04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
119965403 (rad50)
03450 Non-homologous end-joining
119965403 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
119965403 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scau03032
]
119965403 (rad50)
03400 DNA repair and recombination proteins [BR:
scau03400
]
119965403 (rad50)
DNA replication proteins [BR:
scau03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
119965403 (rad50)
DNA repair and recombination proteins [BR:
scau03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
119965403 (rad50)
BRCA1-C complex
119965403 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
119965403 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
AAA_15
SMC_N
DUF1664
Intein_splicing
AAA_29
AAA_16
AAA_22
Motif
Other DBs
NCBI-GeneID:
119965403
NCBI-ProteinID:
XP_038652071
LinkDB
All DBs
Position
4:complement(223362832..223616864)
Genome browser
AA seq
1311 aa
AA seq
DB search
MSKIEKMSIQGVRSFGIDDKSKQVITFYTPLTVLVGPNGAGKTTIIECLKYICTGDFPPG
TKGQTFVHDPKVAHETDVRAQIRLQFRDVNGGVVAVQRSMLCTQKGKKIEFKTLEGVITR
MKHGEKVSLSSKCAEMDREMISALGVSKSVLNNVIFCHQEDSNWPLSEGKALKQKFDEIF
SATRYIKALETLRQVRLKQSQSVREYQTELKYLKQNKEKAHDIQGQLADKETQLAASKEN
VQSIENRIAPLEERLLQIDQNLTKVMKLDNDIKALESRKKQMEEDNRELEEKMEQLFQGT
DEQLQDKYHNHQRTVNEKERLLNDRQRELDRVNQRCQKLNRQRSEMLVEQGRLQLQADRQ
QENIKKRDTLVHSLSMQLELDGYERAPFSDRQFDSFRRQLSARLDSEKESANQLLGDYAE
KEAMKQRQIDEIRDKKTGLGRTIELKLDIQSKRQVELKNVKQELQQLEGSSTRLQELDQE
LNKVEHELEHTETSSNVEGLRTELVVLKEEKEESDKSLRRLDQEMELLNLHTTARTQMEM
LKKDKADKEEQIRRIKSRHGEELVALLGHFPNKKQLEDWLHTKVSEINQSRDKLFKMNKD
LASADQNKNHTNVGLRTKEQQLSAYEEKLFDVCGSQDFESDLYKLQDDIEKTSKQRAMLS
GATAVYSQFISQLTEENEPCCPVCQRIFPSEAELQDIIDDLQSKLRLVPDKLKSAESELK
KKEKRRDEMMGLKPVRETVIELKEKDLPELRNKLQSINRDIQRLKIDMEEQETLLAAFIS
EEGTAKACLQDISLMERYQMELRDVERRIAQQAAKLQGVDVNRTMQQVNQEKQEMQLQAE
TVSNKIELKRKMIQEQQEQIQLLKSMVNEVRAKKLQIASNMQRRQQLEEQSAEFSTEIQS
LQREIRESKEQLSPLAAALDKLQQEKQDLIDRKNTSFKEIQEKINEIREKAKNIDAYARD
IEKYIKDRRDEHKEQKESELQDTVTQINEAEKQREKIHKDMEATRKDIDTQKLEERWLQD
NLTLRKRMEELKVVENKRKERLKEMGEMKVMHLRNERKQLEERLDDFKKNRNLAQGRQKG
FEEEILHFKKELREPQYKDAEMKFREMMIIMRTTELANKDLDIYYKALDQAIMRFHSMKM
EEINKIIRDLWRSTYRGQDIEYIEIRSDADENVSASDKRRNYNYRVVMVKGDTALDMRGR
YSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSNQS
NFQLLVITHDEDFVELLSRSQYVESFYRIKKNIDQCSEIVKCSVNSLNSHA
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaattgagaagatgagtatccagggtgtgaggagttttgggatagatgacaaa
agcaagcaagttatcaccttctatactccattaactgttctagtgggaccaaatggtgct
ggaaaaacgacaataatcgagtgcctgaagtacatttgtacaggtgacttccctcctgga
accaaaggacaaacattcgtccatgacccaaaggttgcccatgaaactgatgtgcgagcg
caaatccgtctccagtttcgagatgtgaatggaggagtggttgctgtgcagaggtcaatg
ctttgcacacagaaaggaaaaaagatagaattcaaaacgctggagggggtgatcacacga
atgaagcacggggagaaagtgagcttgagttcgaaatgtgcagagatggaccgagagatg
atcagcgccttaggtgtatcaaaatctgtgttaaacaatgtcattttctgtcatcaagaa
gattcaaactggcctttgagtgaaggaaaagctctgaaacagaaatttgatgagattttc
tcagctacaagatatattaaagcattggaaacgttgcgccaggtccgcttgaaacagtca
cagtcagtccgggagtaccaaacggagctcaagtacctgaagcaaaacaaagaaaaagcc
catgacattcagggtcagctggctgacaaagagacccagctggctgcttcgaaggaaaat
gtccaatcaattgaaaaccggattgctcccttagaggagcgtttgttgcaaattgaccaa
aacttgacaaaagtgatgaagcttgacaatgacatcaaagctcttgaaagcaggaaaaag
caaatggaggaggacaatcgagaactggaggagaaaatggagcagcttttccaagggacg
gatgagcagcttcaagacaagtaccacaatcaccaaaggacagtgaatgagaaagagaga
ctgctgaatgatcgccaacgcgaacttgatcgggtaaaccagaggtgtcagaaactcaac
cgacaaaggtcagagatgctggttgaacaaggtcgacttcagctccaagctgatcgccag
caagaaaatattaaaaaacgagacacgctggtccactctctatcaatgcagctagaactg
gatggttatgagcgtgcgccattcagcgatcgccagtttgatagttttcgtcgacagttg
tcagctcggttggacagtgagaaagaatcggccaaccagctgctgggcgactatgcagag
aaagaagcaatgaagcaacggcagattgatgagatcagagataagaaaacaggactgggg
agaacaatagaacttaagttggacattcagagcaagagacaagttgagctgaagaatgtt
aaacaggaactccaacagctggaagggtcttccactagactgcaggaattggaccaagaa
ctcaataaagtggagcatgaactagaacatacagaaacaagcagcaatgtggagggcctg
aggactgagttggttgttctgaaggaagagaaggaagaatcggacaagtccttgcggaga
ttggatcaagaaatggagctgttaaacttgcacactacggccagaactcaaatggaaatg
ctgaaaaaagacaaggctgacaaagaagaacagatcaggaggataaagtcaagacacggc
gaggaactggttgcactgttggggcatttcccaaacaagaaacaactagaagattggctt
catacgaaagtttcagagatcaatcagtccagggataaacttttcaagatgaacaaggac
ttagcttcagcagaccagaacaaaaatcacacaaatgtgggactgagaacgaaagaacag
cagctctctgcctatgaagagaagctctttgatgtgtgtggaagccaggattttgaaagt
gacctgtacaaacttcaggatgatatcgaaaagacatcaaaacaaagagctatgctctcc
ggagcgacagccgtatacagccagtttatcagccaactaactgaggaaaatgagccctgc
tgtcccgtctgtcaacgcattttcccctcggaggccgagttacaggacattattgatgat
ctgcagtcgaagctgcggcttgtcccagataagcttaaatcagctgagtctgaactgaag
aagaaagaaaagcgccgtgatgagatgatgggactgaaaccggtcagagaaactgtaatt
gaacttaaagaaaaggatttacccgagttgcgaaataagcttcagagcatcaatcgagat
attcagcgcctgaaaattgacatggaggaacaggagacacttcttgctgcctttatatct
gaggaaggcactgcaaaagcatgcctacaagacatatcgcttatggagcgataccagatg
gagttgagagatgttgaacgtaggattgcacagcaagctgccaagcttcagggagtagat
gtgaaccgaacgatgcagcaggtcaaccaggagaagcaagagatgcaactacaagcggag
acagtgtctaataaaattgaactgaagcggaaaatgattcaagagcagcaagagcagatc
cagctgctgaagagcatggtcaatgaggtccgagctaaaaaactgcagatcgccagcaat
atgcagcgacgtcaacagttggaggaacagagcgcagaattctccacagagattcaatcc
ctgcagagagaaataagagaatctaaggaacagttatctccactagctgctgctctagat
aaactacaacaagaaaaacaggatctgatagacaggaaaaatacaagcttcaaggagata
caagagaagataaatgaaatcagagaaaaagccaagaatattgatgcatatgcaagagac
attgaaaaatacatcaaggacagaagagatgaacataaagagcaaaaagagtcagaactt
caggataccgtgactcaaataaacgaagctgaaaagcagcgagagaagatacacaaagat
atggaggctacaagaaaggacatcgatacacagaaacttgaggaacgatggttacaggat
aacttgacattgcggaagaggatggaagaattaaaagttgtagagaataagaggaaggaa
cgactgaaagagatgggagagatgaaagtaatgcatctcaggaatgagcggaaacagctg
gaagagcggctagatgatttcaagaaaaatcgcaatctggcacaagggcggcagaagggg
tttgaggaggaaatacttcacttcaaaaaggagctgagggagcctcagtataaagacgct
gagatgaagttcagagaaatgatgatcatcatgcgaaccactgaactggctaacaaggat
cttgatatttattacaaggcactagaccaagccatcatgagattccacagtatgaagatg
gaagaaatcaacaaaattatccgtgacctgtggcggagcacatacagaggtcaagatatt
gaatatattgagatccgttctgatgctgacgaaaatgtgtctgctagtgacaaaaggagg
aattataattaccgtgtggtaatggtgaaaggggacacagcactggacatgagaggaagg
tacagcgctggacagaaggtccttgcttctctcattatccggctggcactggcagagacc
ttctgcctcaactgtggaattcttgcactggatgaaccaaccacaaacctggaccgtgag
aacatcgaatccctggcccatgccttggtggagataataaagagccgctcaaaccaaagc
aacttccagctgctggtgatcactcacgatgaagattttgtggaactgctgagtcgctcg
caatacgtcgaaagcttctaccgaatcaaaaagaatattgatcagtgttcggaaatcgtg
aaatgcagcgtcaactccctgaactcgcatgcttag
DBGET
integrated database retrieval system
