Scyliorhinus canicula (smaller spotted catshark): 119965455
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Entry
119965455 CDS
T11175
Symbol
gemin5
Name
(RefSeq) gem-associated protein 5
KO
K13133
gem associated protein 5
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
scau03019
]
119965455 (gemin5)
03041 Spliceosome [BR:
scau03041
]
119965455 (gemin5)
Messenger RNA biogenesis [BR:
scau03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
119965455 (gemin5)
mRNA cycle factors
P-body specific factors
119965455 (gemin5)
Spliceosome [BR:
scau03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
119965455 (gemin5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_GEMI5
WD40_CDC20-Fz
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_RIG_2nd
WD40_Prp19
Beta-prop_EML_2
WD40
WD40_WDHD1_1st
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR3_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML
Beta-prop_RIG_1st
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_HPS5
Beta-prop_Aladin
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_WDR41
Beta-prop_WDR35_TULP_N
Beta-prop_Vps41
WD40_MABP1-WDR62_1st
Beta-prop_Nup120_160
Beta-prop_ACSF4
Beta-prop_SPT8
TPR_IF140-IFT172
Beta-prop_IP5PC_F
Lgl_C
Motif
Other DBs
NCBI-GeneID:
119965455
NCBI-ProteinID:
XP_038652180
LinkDB
All DBs
Position
4:complement(232791068..232848361)
Genome browser
AA seq
1183 aa
AA seq
DB search
MPGKVLTPSPNWYCSRCCDCSSRGVLGFGAKNSIYLLDSSRGQPHLLGELAGHTERVTGF
TFSHHPGQTDTCASTSDDGTVKVWDIQTRTVLKEHTAHQSPIAAVHWSPLEKELVVTGDE
KGIVICWWYNRNETHHFFPEPRNIFCLSCSPHNGDHVAVGYRDGMIVIIDINRKGEVIHR
LRGHDGEIHFLSWCPQLCDKGLFGHYDTTSETEGLNGELVKEDTAKDYFLASGSRDQTIR
IWNSTNGKGVMTLKLPSLKRRGGTDLGIKERIWLTVLWSRTRVTQLISSSFGGELLLWDL
TKSGKQKWTLLGSSSEGQNHSRIVFNLSSVCLQDNSELLFSTSMDRDVKCWDLNTLDCAW
TQPTLGGFVYSLAFSPVNVGTLAIGVGDSMIRVWDTLSLQSAYDIKTLWQGIKSKVTSLC
WHLAKEGTLAFGTEDGKVGIFDIYSNKPPQISSSYHRKTVYALAWGSPLPPITTGGDGDG
PGMMLYSCAGEGIILQHNPWKLAADAQDINRLIRETNGITHKLPGRSELNWKPDGETLAI
GNDDGSIEIFQAPRLKLLCSIQTHHKLLNAIRWHHGHGTQPDLGYLIASGSNSAVIYIHN
LKTVLENPPDTPVTVTEPFRTLAGHTAKITSLSWSPHHDAMLVSACYDGSAQVWDVLKEE
PLCNFRGHVGRLFGVQWSPVDADSVWTGGDDFTVRLWEVSKQEHTRPPKGKKAVEMDKKR
ANCSKLKSKKVKKRNEKGSGGQEEGNAESSTPKVASSRNGDADREEEEDCRNEAETPKLV
NGISQTPEPLEEPRPQEIMGPSTPTTARSQTPPVRKERLKDKRERERAEAAMRKKKGRSA
LPLSTVNDHRSKDELHSDCVNLANILYSKESVGQSRPGSQEEIQLGLFVDRPALYRMFEE
EGQNHLEAGHPEICYQLMLWKGDVRGALEMATERRELNDTLVAMAPMAGYAVWMKTIEAF
CKQLCFQEQYVKAATYLLSIHKVYEAVKVLQSHQLFREAIAIAKARLQPDDPLLKELYTS
CASVMEKDGHYTIAAKCYLTSKSPYDAAKVLAKKGDTASLKTAAEVASIVGEKELSSLFS
SRCALDLLSLRNWLGAQEVLRPQESLLGQRLVLCTYELLYRYLANRDLVLWKSMNTPCYH
NWTLLNDQPLINSVTAVWQSEFGITGDNAERLKIAHQQLRMTE
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgccgggcaaagtgctgactccctccccgaactggtattgtagccgctgctgtgactgc
agctcccggggcgtcctgggcttcggagccaagaacagcatctacctgctggacagcagc
cggggccagcctcacctcctcggagagttggcgggtcatactgaaagggtcactgggttc
acctttagtcaccacccgggccaaacggatacctgcgccagtacgtctgacgatggcact
gtcaaagtctgggacattcagacgagaactgtactcaaggaacacacagcccaccagagt
cccatcgctgctgttcattggtctcccctggagaaggagttggtggtgacgggggatgag
aaggggattgtgatctgctggtggtacaacagaaatgagacccaccattttttcccagaa
cccaggaacattttctgcctatcctgctcgcctcacaatggagaccacgtggcagtgggg
tacagagacgggatgattgtcatcatcgatataaaccgaaagggggaggtgattcacagg
ttgcggggtcacgacggcgagattcactttctctcctggtgtccccagctctgtgacaaa
ggcctttttggccactacgacactacctcagaaacagaggggctgaatggcgagcttgta
aaagaggacactgccaaggattatttcctggcatcagggagcagggaccagacaatccgc
atctggaactctacaaacggaaaaggtgtgatgactctgaagctgccctcgctgaagcga
cgaggagggactgatctgggaataaaggagcggatttggctgactgtgctttggtctcga
acccgtgtcactcaactgatctccagcagctttggtggggagctgctgctctgggatctg
accaagtcagggaagcagaagtggacactgctggggtcatcgtcggaaggacagaaccac
agcaggatcgtcttcaacctgagctcggtctgtctccaagataacagcgagctcctgttc
tcgacctcaatggaccgagacgttaaatgttgggatctgaatacactggattgtgcctgg
acgcagcctacactcggtggctttgtctacagcttggcgttctcacctgtgaatgtcggc
acgcttgctattggtgtcggcgatagcatgatcagggtgtgggacaccctgtctctccag
agtgcctatgacatcaagaccctctggcaaggaatcaaatccaaggtcacatctttatgt
tggcatctggctaaggagggcacattggcatttggaaccgaagatggaaaagttggcatt
tttgacatttattcaaacaagccgcctcagatttccagctcctaccacaggaagactgtt
tacgccctggcctggggttccccgctgccccccattaccactggtggggatggcgacgga
ccgggtatgatgttgtacagctgtgcgggcgagggcattatcctccagcacaacccctgg
aagctggcagccgatgcccaggacattaaccggttaatccgagagaccaatggaatcacg
cataaacttccaggtcgcagcgagctgaactggaagcctgatggtgaaaccctggctatt
gggaatgatgacgggtcaattgagatcttccaggctcctcgtttgaaattgctgtgcagt
attcagacacaccacaaactgctgaacgccatccgctggcatcacggacatggcacgcag
cctgacctcggctacctgatcgcatctggttccaacagcgccgtcatctatattcacaac
ctcaaaaccgtattggagaatcccccggacacaccggtaacggtgactgaaccattccga
acactggcggggcacaccgcaaagatcaccagtctgtcctggagcccacaccacgacgca
atgctggtgtccgcctgttacgacggcagcgcccaggtgtgggatgtcctcaaggaggag
cctttgtgtaacttccggggacatgtcgggaggctgtttggggtgcagtggtctccggtc
gatgcagactccgtgtggacaggaggcgatgacttcacggtgcggctgtgggaggtttca
aaacaggagcacacccgaccaccgaaaggaaaaaaggcggtggagatggacaagaaaagg
gccaactgttccaaactcaaatctaaaaaggtcaagaagagaaacgagaaagggagtggg
gggcaggaggaagggaatgcagagagttcgaccccgaaggtggcaagcagcagaaacggt
gatgctgatcgtgaggaggaggaagactgtcggaacgaggccgaaacgcccaaactggtc
aacggtatctctcaaaccccagaaccactggaggagcccaggccacaggagatcatgggt
cccagcaccccaacaacagcaagaagccaaactcctccggtgaggaaggagagactgaaa
gataagagagagagagagagagcagaggcggcaatgaggaagaagaaaggacgatcggcc
ctcccactcagtacggtcaacgaccaccgatcgaaggacgaactccactcggactgcgtg
aacctcgctaacatcctctactccaaagagagtgtgggccagagccggccggggtcacag
gaggaaatccagttgggtctctttgtggacagaccggctttgtacaggatgtttgaagag
gaaggccagaatcatctggaagccgggcaccccgagatttgttaccagcttatgttgtgg
aaaggtgatgtgagaggggcgttggagatggccactgagaggcgggagctgaatgacact
ttagttgccatggcgcccatggctggctacgcggtttggatgaagacaatcgaagctttt
tgcaaacagctgtgtttccaggaacagtatgttaaggctgccacttacctcctgtccatt
cacaaggtgtatgaagctgtgaaagtgctccagtctcaccagttatttcgagaggccatt
gccatcgccaaagcccgtctacaacccgatgaccctcttctgaaggagctctacaccagc
tgtgcttccgtcatggagaaagacggtcattacacaatcgcagccaagtgctatctaacg
tccaaatcaccgtacgacgcggccaaggtcttggccaagaagggcgacacggcttcactg
aagactgctgcagaggtggcttccatcgtcggtgagaaggaactgtcttccttgttctcc
tccagatgtgccttggacctgctgtctctacgcaactggctgggggcacaggaggtcttg
cgcccacaggagagtttgttggggcaacgcttggtgctgtgtacgtacgagttactgtac
aggtaccttgccaatcgggatctggttctgtggaagagcatgaacacaccatgttaccac
aactggaccttgctgaatgaccaacccctcatcaactcggtgactgcggtgtggcaaagt
gagtttggcatcacgggggacaatgcggagagactgaagatcgcccaccaacagctgagg
atgacggag
DBGET
integrated database retrieval system
