Scyliorhinus canicula (smaller spotted catshark): 119965489
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Entry
119965489 CDS
T11175
Name
(RefSeq) protocadherin alpha-C2-like isoform X1
KO
K16499
protocadherin delta 2
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
scau04515
]
119965489
Cell adhesion molecules [BR:
scau04515
]
Cadherins
Protocadherins
119965489
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Cadherin_tail
Asp5
Motif
Other DBs
NCBI-GeneID:
119965489
NCBI-ProteinID:
XP_038652236
LinkDB
All DBs
Position
4:235262902..235894680
Genome browser
AA seq
1080 aa
AA seq
DB search
MKRLTSIAGEMTTGKRSWTQTRQVLCFIALSYFTDLISGQIRYTIPEELKHGAFVANVAD
DLGLNVSELSARRLRIVSGASTQYLEVNLGNGILFVNEKIDREQLCGPVFTCFLHLEVVI
ENPLELYRIEVEIVDINDNAPTFLRKEFSLDIIESALPGMRFPLESAHDPDVGTNSVHTY
RLSPNDHFILDVERRSDGSKFAALVLENILDREQQRAHQLVLTAVDGGIPQRSGTALITV
TVLDANDNLPVFEQTNYQVSLKENAPKGTLVLKLNASDLDEGSNSDILYSFSSHTPPRVH
ELFSVDTHTGEIRVKSMIDHEELNMFEIYVQAKDKGGPYAIPVHCKVLVDIIDVNDNAPE
VILTSLSSPVMEDAMIGTVIALISVTDKDSEKNGHINCEISQGVPFKLQSSFKNHYTLVT
TRLLDRERVCEYNITITAIDSGYPSLSTTKSIFLKVSDVNDNAPTFSKPSYTVYITENNA
PGATVCSVTALDPDSNQNAYLSYSIMDGLIRGLPSRSYVSINSDNGKVYALRSFDYEQLK
EFQIQIQAQDAGFPPLSGTTKVNVIILDQNDNVPLIVFPRPNNGSAALQKVPQSVDSGQV
VIKVIATDADSGQNAKLSYQLLKATDRTLFKVALYTGEVRTTRPFGDRDVPKQTLVILVK
DSGQTSLSATVTIIFSIMDNITETLPEISDVSENPGQNSALLFYIIITLGSISFLFIVAI
IIVVTIKCRQYRNNAQDCNTAIGNCCIQHLNSADILKTSKTNLQVTTSPKVPPDFLEMGG
SGPVSQTYYYKVCLTPESAKSDFTFLKPFSQSKPKDRTSTADPGAVDWNGDPPITLNSEL
STSSVNAQVIQFREWDENISSQVKQPNADWHFAQTHRAELNSAQYLEEEGVQREIQREVQ
REVQCDVQREVPRDVQCDVPHNIQREVQRDVQCDMQRVVEKDPGGPRKPMCARPVAIPAG
RDGWTLPRTAPRMQLQMTLGAHVPGTLRSQYLIPRELHTSGARISNSSVEFSAPLIGSLH
GPMAANQTRDHRGISSPGSRRPELDPQARGEIPCSPTGQRLSTQRLHSRDHDHALREVNY
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaggctgacctcgattgccggagaaatgacgactgggaagagatcgtggacacaa
acaaggcaagtcttatgcttcattgccttgtcctattttacggatttgatttcaggacag
attcgctatacaattccggaagagctaaagcacggagcctttgttgcgaatgttgctgat
gatttaggtttgaatgttagtgagctatccgccagaagactgcgcattgtttctggtgct
tcaacacagtatttagaggtaaatttgggcaatggaattttgttcgtgaatgaaaaaata
gacagagagcagctatgtggtccggttttcacttgttttctgcatctcgaagttgttatc
gaaaatcctctcgaattataccgtattgaagtggagattgtggatataaatgataacgcc
ccaactttcctgaggaaggagttctctttggacattatagaatcggctttgccaggtatg
cgtttccctctggagagcgctcacgatccagatgtggggactaactcagttcacacctac
aggctgagcccaaatgaccattttatcttggatgtggaaaggcgaagcgatggtagcaaa
tttgcagcacttgtgttggagaacatattagacagagagcaacagcgcgcccatcagtta
gttctaacggccgttgacggtggaatcccacagagatctggtactgccctgatcactgtc
accgtcttggacgccaatgacaacttacctgtcttcgaacaaacaaattaccaagtttca
ttgaaagaaaatgcacccaaaggaacattggtattaaaattgaatgccagcgatttggat
gaaggctctaacagtgatatactatattctttcagcagtcacactccgcctagagtgcac
gaactgttcagtgtggacacccacacaggtgagatcagagttaaaagcatgatagatcac
gaagaattgaatatgtttgaaatatatgttcaagccaaagacaaaggtggcccatatgca
atacctgtgcattgcaaagttctagtagacataattgacgtgaatgataatgcgcccgaa
gtgatcctgacttcactgtcaagcccagttatggaagacgccatgatcggtacggtcata
gctctcatcagtgttacagacaaagattctgaaaagaatggacatatcaactgtgagatt
tctcagggtgtcccatttaagcttcaatcctcctttaagaatcattacacactggtgacc
acgcgtcttctggaccgtgaaagagtgtgcgaatacaatatcacaatcacagccattgac
tcgggatatccttcactttccaccaccaagtctatctttctaaaggtttcagatgtgaat
gacaacgctccaacattttctaaaccttcctatacagtgtacattacagaaaacaatgca
ccgggcgctaccgtttgttccgtaacagcattagatccggattcgaatcaaaatgcctat
ctgtcctattctatcatggacggtttgatccgcggactaccttccagatcctatgtttca
atcaattcggataatggcaaggtttacgcgttacgctccttcgactacgaacaactaaaa
gaatttcaaatccaaatccaagctcaggatgctggatttccaccactcagtggcactaca
aaggtaaacgtgataatcttggaccagaatgataacgttcccctcattgtgttcccccga
ccaaataacggttcagctgcattacagaaggtgccgcaatccgtggattccgggcaagta
gtgatcaaagtcattgctacagacgcggacagtgggcagaatgcaaagctctcctatcaa
ttactgaaagcaacagatcggacactgttcaaagtagcgctctacacaggagaagtaagg
acaacccgccctttcggggaccgagatgtcccgaagcaaacgctggtcatccttgtgaaa
gacagcgggcaaacttcgctttcggccacagttaccattatattttcaataatggacaac
attacagaaactttgcctgaaatcagcgatgtatctgagaacccaggacaaaattctgcc
ttactattttacataattatcacactgggatccatttcatttctattcattgtggccata
attatcgtggtcaccatcaaatgccgccaatatagaaataatgcccaagattgcaacacg
gccatcgggaattgttgcattcagcatttgaattctgcagatattctgaagacatctaaa
acaaacctccaagtaacgaccagcccgaaagttccacctgactttttagagatgggtgga
agtgggcccgtctcacaaacctattactacaaggtatgtctgactccggaatctgccaaa
agtgatttcacattcctcaaaccgttcagccaatcaaaacccaaagacaggaccagtact
gctgacccaggtgcggtagattggaatggggacccaccaataactttaaacagcgagcta
tcgacgtccagtgtcaatgcgcaagtcattcagtttcgtgagtgggatgaaaatatatcc
agtcaggtgaaacaaccaaatgctgactggcattttgcgcagactcacagagctgaacta
aacagtgctcagtatctggaggaggaaggggtgcagcgtgagatacagcgtgaagtccaa
cgagaggtgcagtgcgacgtgcagcgtgaagtacctcgtgacgtgcagtgtgatgtgccc
cataacattcagcgtgaagttcagcgagatgtgcagtgtgatatgcagcgtgttgtcgag
aaagaccctggtggaccaaggaagccaatgtgtgcgcggcctgttgccatccctgccggt
agagacgggtggacactaccacggacagctccacgaatgcagttgcagatgacgctaggc
gctcacgtaccaggaaccttgcgaagtcagtatctcatcccccgagagcttcatacaagt
ggagcacgtatcagtaattcaagcgtggagttcagtgcacctcttattggcagcctgcat
ggtccaatggctgcaaatcagacacgagatcatcgaggcatctccagtccgggtagcagg
aggccagagttggacccccaggctcgcggtgaaattccctgttcaccaacaggccaacga
ctatctacacaacgtctacattcccgggaccacgaccacgctctccgggaagtcaactac
tga
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