Scyliorhinus canicula (smaller spotted catshark): 119965878
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Entry
119965878 CDS
T11175
Symbol
nod1
Name
(RefSeq) nucleotide-binding oligomerization domain-containing protein 1 isoform X1
KO
K08727
nucleotide-binding oligomerization domain-containing protein 1
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04621
NOD-like receptor signaling pathway
scau05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
119965878 (nod1)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
119965878 (nod1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
scau04054
]
119965878 (nod1)
Pattern recognition receptors [BR:
scau04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
119965878 (nod1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
119965878
NCBI-ProteinID:
XP_038652755
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Position
5:28746871..28835084
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AA seq
948 aa
AA seq
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MDRVCQPVSRHQMSVISTHSFIKLLKLHREILVGRIKNTECVLDNLIKHEYISGEEAELS
QQHPTQAAKVRKILDLVESKGEETAEYFLHVLYQASEVYTNLSPWLEEIQYQPSDHIRTK
SVIITDAVCQYIQKIKHDLRQDTKFVTSYVQKEDTLLDDTYTESLMELINAVNETKGNIS
HLEDLFSDTGVINEDAETVFVTGDAGIGKTILLQRLQNLWSKGELCADVKFFFKFRCRIF
NSFKEEDKISLRDLLFKYNCYPDKDADEIFSYIRQHPASVLFTLDGFDEINVDCDLSDIP
DISSPFEPTHPVALLMNLLRGRLLKSSIKILTARTGTNLPLRMVRKRVALKGFSKDHLLR
YSKKFFKNKPHQTSVFTQLEANPHLCSLCSVPLFCWIIFKCYEHFQATCSSQQLLGYITL
TDVYLLMLEVFLNRSSKAGLNKRNKSQNETFKAKRDTLMRLGKLAKEGIENSNFIFSQEQ
ITAAGISEEDLQLGFVKNTGHYDGCGNQSTYEFLHLTLQSFFAAFSLVVDEEISAKELIK
FFSKCDSYLTGARTNVLLLRCLGYSTHHRKDPFETNEHLQFTTLFLCGLLSKTKRDLFKH
LASTGSVQRKHSALKAYLADCVKVHLKNLPKAAFEEFCRVQVLPRFIWLLRYIFETQSEA
IANLAAKGICADYIKLTFCNAFSADCSAIANILRHRKKSIALELDNNNINDYGVKELIPC
FDKLTVVRLSVNQVTDDGAKVLAEELTKYKIIKILGLYRNQITDVGAQSIAQIVEECPCL
RTLKIGLNKLTSEGGKLIAQAIQKSKVIRDVGMWGNQIGDAGAVAFAEAIRNHPSIRELS
LAANGISAEGGKSLAVALKDNRSLEIFWLTENQLNDEAAELFAEALRFNKSLLHLWVINN
KITEVGAKYFFEILKENATIEEIWSWTGLSEVTGLEAVTEIGRREAIE
NT seq
2847 nt
NT seq
+upstream
nt +downstream
nt
atggatagagtgtgccagcctgtatcacggcatcaaatgtcagtcatatcaacgcactcc
tttattaagttgctgaagttacaccgagagatcttggttggtcgtatcaagaacacagag
tgtgtgctggacaatttgataaaacacgaatacatttctggtgaagaggctgaattatca
cagcagcatcctacacaagcagctaaggtacgaaaaatattggacctggttgagagcaaa
ggagaagaaacagcagagtatttccttcacgtcttgtaccaggccagtgaggtttacacc
aaccttagcccatggttggaagaaatacaataccagccatcagaccacatacgaaccaaa
tcagtaattatcacagacgctgtctgtcagtacattcaaaagattaaacatgatctacga
caggacacaaagttcgtcacttcgtacgtccagaaagaagacaccttgctggatgatact
tacactgagtctcttatggaattaatcaacgctgtaaatgaaactaaaggaaatatttcc
cacttggaggatttgttcagtgacactggagtcatcaatgaagatgcagaaacagtcttt
gtaactggtgatgctgggattggcaagaccatactgctccagagacttcagaacttgtgg
tccaaaggggagctctgtgctgatgtgaaattcttcttcaaattcagatgtcgaattttc
aatagctttaaggaggaagataagatctctctcagagatctactgttcaaatataactgt
taccctgacaaagatgctgatgagatattcagctacatccgccaacacccagcttctgtc
ctcttcacactggacgggtttgatgaaatcaatgttgactgtgacctcagtgacatccct
gacatctcctcgccctttgaacccacgcaccctgtggcccttttgatgaatcttctccga
ggaagactattaaaaagttccataaaaatattgacagcaagaacgggcacaaatctaccg
ttgagaatggtgagaaagagagtggcactgaaaggcttttccaaggaccatttactgcga
tattcaaagaaattcttcaaaaacaaaccacatcaaacctcagttttcacccagctggag
gcgaaccctcacctgtgcagtctgtgctcagtgccgttgttttgttggattatatttaaa
tgttatgaacactttcaggccacatgtagctctcagcagctgctgggctacattacattg
actgacgtctatctgttgatgttggaggttttcctaaaccgttcttccaaagcaggattg
aacaaaagaaacaaaagtcaaaatgaaacattcaaagccaagagggatacattaatgaga
ttgggcaaattagcaaaagaggggattgaaaacagcaacttcatctttagtcaggagcaa
atcacagcggctggcatctcagaggaggatttacagttgggttttgtcaagaatacgggc
cattacgacggatgtgggaaccaatcaacttatgagttccttcacttgaccctgcagtca
ttttttgctgccttttccttggttgtggatgaggaaattagtgcgaaggaactcattaag
tttttttccaaatgtgacagctacttgactggtgcccgaaccaatgttcttttgctaaga
tgcttgggctacagcacacaccacagaaaagatccatttgaaacaaatgaacatttacag
ttcacgacgcttttcctctgcggcctattgtctaagactaagagggacctgtttaaacat
ttggcttccacgggaagcgtccaaaggaagcactcggcactcaaggcctaccttgccgac
tgtgtgaaggtgcacttaaagaatcttccgaaagcggcttttgaagaattttgtagagtg
caagtcttgccccggtttatctggttgctgcgctacatttttgaaacccagagtgaagca
attgccaatcttgcagctaaagggatttgcgctgattatatcaagctcacgttttgcaat
gccttctctgctgactgcagtgccattgccaatattttgcgccaccgtaaaaaatcaatt
gctcttgaactggacaacaataatatcaatgactatggagtgaaagaactcattccttgt
tttgataaactcacagtggttagattgagtgtaaatcaggtaacagacgatggagccaag
gtactggcagaagaactcacaaagtacaaaatcattaaaatccttggcctgtacaggaat
cagatcactgatgttggtgcccagtcaattgcccaaattgttgaagaatgcccctgtctt
cgaacgttaaaaattggactcaacaaacttacaagcgaaggagggaaattaatagcgcag
gcaattcagaaaagcaaagtcatcagagatgtagggatgtgggggaatcagatcggagac
gcaggcgctgtcgcctttgctgaagctataagaaaccatccttcaataagagagctcagc
ctggcagcaaatggcatttccgcagagggtggaaaaagtttggcggtagcactgaaagac
aacagatccctggagatattttggttgacagaaaatcagttgaacgatgaagcagcagag
ttatttgctgaagcgctcaggttcaacaaaagcctacttcatttatgggtcattaacaac
aaaattacagaggtgggagcaaagtatttcttcgagatactcaaagaaaatgcaacaata
gaagagatttggagttggacagggttatctgaggtcacaggactggaggcggttacagag
atagggaggagagaggccattgagtga
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