Scyliorhinus canicula (smaller spotted catshark): 119965881
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Entry
119965881 CDS
T11175
Name
(RefSeq) nucleotide-binding oligomerization domain-containing protein 1-like isoform X1
KO
K08727
nucleotide-binding oligomerization domain-containing protein 1
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04621
NOD-like receptor signaling pathway
scau05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
119965881
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
119965881
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
scau04054
]
119965881
Pattern recognition receptors [BR:
scau04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
119965881
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
119965881
NCBI-ProteinID:
XP_038652765
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Position
5:28910095..28965587
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AA seq
942 aa
AA seq
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MEQTAVRKQRVPSYLDLLMVHRVELVNGIINTECILDNLLHLGYFTFEDTEFIQQSITRH
DKVRKMLDIIYAKGEESAEVFLYILNCAKEVYSDLHPWLREIHYCPSEQLLKKPVLITDA
VSQYTEKLRGELRRDTRLTSSYVQKEGTLFDDTYTETLMELINAVNETKGNISHLEDLFS
DTGVINEGAETVFVTGDAGTGKTILLQRLQNLWSKGELCADVKFFFKFRCRIFNSFKRED
KVSLRDLLFKYNCYPDKDADEIFSYIRQHPASVLFTLDGFDEINIDCDLDDIPDISSPFE
PTHSVALLMNLLQGKLLKGSKKLLTARTGTELPLSMVRKRVMLKGFSKDHLLQYSKKFFQ
NEAHRTLVLTQLEANPHLCGLCSVPLFCWIIFKCYEHFQSEHNSQRLAHSVTLTDIYLVK
IEVFLNHSSQAILNRKNAKSQIHLFTTKKETLMRISKLALKGIETHNFVFSQEEIAAAKI
SEEDLQLGFIKTVSHYNGCGNQSTYEYIHSTLQSFFTAFSLVLDDEIHPRDLLALFNNGS
RPTTSTHRLSDWVLAFLSPSRYSSTNVLQSFSENLQFTLLFLCGLLSDRNIDLLLNLATP
GTVKEKQSVLTSYLSNCMRAHVQSLPRSHLEDGCKVHMLPRFIWLMRCIFEMQNGAAARL
AAKGINADYIKLNYCNVSSTDCGALAFILRHVRTPLALEMDNNNINDYGVEQMFSCFGQL
TVLRVNVNQITDYGVHILVKELKKHQKIKSLGLYKNFISDLGARDVAELIEGCPSLVHLR
MGANMITHEGGTYLARAIQKSKTVEDVGFWGNQIGDRGAEAFAEALRDHQSLKNLSLAAN
HISSEGSKHLAKSLCKNSSLKIFWLTQNDLDDAAADSFGKMLRVNKSLEKLWLIENKITT
RGATYLLHALRENTTMDEICLKDNCIPPEDACHLVKDKRIVI
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggagcagacagcagttcgtaaacaacgggttccctcttaccttgatctcctcatggtg
catcgggtggagttagtgaatggaattataaacactgagtgcatcctggataacctgcta
cacttgggatacttcacattcgaagatactgagttcatacagcagagtataactcgacat
gacaaggttcgtaaaatgctggatataatctatgctaaaggagaagaaagtgctgaagtc
ttcctctatatcctgaattgtgccaaagaggtttactcggatttgcatccctggttaaga
gaaattcattactgcccgtcggaacagctgctgaagaagccagtgctgattacagatgcc
gtctcccagtatactgaaaagctccgaggtgaattgcgacgagatacaaggttgacttca
tcatatgtccaaaaggaaggtactctatttgatgatacttacactgagacgcttatggaa
ttaatcaacgcagtcaatgaaactaaaggaaacatttcccacttggaggatttgttcagt
gacactggagtcatcaatgaaggtgcagaaacagtctttgtaactggtgatgctgggact
ggcaagaccatactgctccagagacttcagaacttgtggtccaaaggggagctctgtgct
gatgtgaaattcttcttcaaattcagatgtcgaattttcaatagctttaagagggaagat
aaggtgtctctccgagatctactgttcaaatataactgttaccccgacaaagatgctgat
gagatattcagctacatccgccaacacccagcttctgtcctcttcacactggacgggttt
gatgaaatcaacattgactgtgaccttgatgacatccctgacatctcctcgccctttgaa
cccacgcactctgtggcccttttgatgaaccttcttcaggggaaattattgaaaggctcc
aaaaaattattgacagcaagaactggcaccgagctaccgttgagcatggtgagaaagaga
gtgatgctgaaaggcttttccaaggaccatttactgcagtactcaaagaagttcttccaa
aacgaggcccatcgaactttggttttgacccaactggaggcgaaccctcatctttgcggt
ttatgctcagtgccgttgttttgctggattatatttaaatgttatgaacactttcagtct
gagcataactcccagcggttagcacattctgttacactgacagatatttacctggtcaag
attgaggtcttcctcaaccattcctctcaggctattctaaatagaaaaaatgccaaaagc
cagatacatttgttcacaaccaaaaaggaaactttgatgcggattagtaaactagctctg
aaaggcattgaaacgcacaattttgttttcagccaggaggaaattgcagcagcgaagatt
tccgaggaggatttacagttgggcttcatcaaaactgttagtcattataatggatgtggg
aaccagtcgacgtatgaatatattcactcgacgctccagtcatttttcacggcattttca
ttagttctagatgatgagatccatccacgggacctccttgcactgttcaataatggcagt
aggccaacaacgtcaacccacaggctaagtgattgggttttagctttcttgagcccttca
aggtattcttccacaaatgtcctccagtcattcagcgaaaatcttcaatttaccttgctg
tttctttgtggcttgctgtctgatcgcaatattgatctgttgctaaacctggccactcca
ggaaccgtgaaggaaaagcagtcggtgctgacgtcctacctatccaactgtatgagggca
cacgtgcaaagccttcctcgctcccacctagaagatggttgcaaagttcacatgctacca
cgtttcatttggctgatgaggtgcatttttgaaatgcagaatggggctgcagccagattg
gcagccaaagggatcaatgccgattacataaagctgaattactgcaatgtttcttctact
gactgtggtgcccttgcatttattttgcgccacgtccgaacaccccttgcactggagatg
gacaacaacaatatcaatgattatggtgtggagcaaatgttctcatgtttcggtcagctc
acagtcctcagggtgaacgtaaatcagatcacagactatggtgtccatatcttggtaaaa
gaactcaaaaagcatcagaagatcaaatcactcggactttacaagaatttcataagtgat
cttggggcgagggatgttgctgagctgattgaaggttgccccagtctcgttcatttgagg
atgggagctaacatgatcacccacgaaggaggaacttatctagccagagcaatccaaaaa
agtaaaactgttgaagatgtcggattctggggaaatcagataggagacagaggagctgaa
gcttttgcagaggcgttgagagatcaccaaagtctgaaaaatctgagccttgcagccaac
cacatctcatcagagggcagcaaacatctggccaagtcactctgcaaaaacagctcactc
aaaatattctggttgacacaaaatgatttagacgatgcagcagccgacagctttggcaaa
atgctaagagttaacaaatcgctggaaaagctgtggctgattgaaaacaagataacgacc
cgaggagctacatacctccttcacgctctccgagaaaacaccaccatggatgagatctgt
ctgaaggataattgcattccgccagaagatgcctgtcatctcgtgaaagacaaacgcatt
gtcatctag
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