Scyliorhinus canicula (smaller spotted catshark): 119965937
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Entry
119965937 CDS
T11175
Symbol
cdkal1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase isoform X1
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase [EC:
2.8.4.5
]
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
scau03016
]
119965937 (cdkal1)
Enzymes [BR:
scau01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
119965937 (cdkal1)
Transfer RNA biogenesis [BR:
scau03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
119965937 (cdkal1)
Prokaryotic type
Methylthiotransferases
119965937 (cdkal1)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
Motif
Other DBs
NCBI-GeneID:
119965937
NCBI-ProteinID:
XP_038652891
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Position
5:complement(42375797..43157761)
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AA seq
572 aa
AA seq
DB search
MPAACDSLVEDIEDIVSAEDPTPHDQLFAKRSIVPHVRKRNKHKQDDGTEDLHADSVIPG
TQKIWVKTWGCSHNNSDGEYMAGQLAVYGYKITDNSLDADLWLLNSCTVKNPAEDHFRNS
IKKAQEQNKKVVVAGCVPQAQPRMDYIKGLSIIGVQQIDRVVEVVEETIKGHSVRLLGQK
KDKGKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYSVAELVDRA
IQSFQEGVCEIWLTSEDTGAYGRDIGTDLPTLLWKLVEVIPEGAMLRLGMTNPPYILEHL
EEMAKILLHPRVYSFLHVPVQTGSDSVLMDMKREYCIADFKRVADFLKEQVPGITVATDI
ICGFPGETEVDFQETLKLIQEYKFPSLFINQFYPRPGTPAAKMEQVPAQVKKQRTRMLSQ
LFQSYTPYDYKIGEKQQVLITEESFDGQYYVAHNKFYEQVLVPKQPELLGKMIEVDIYEA
GKHFMKGKPAQNGKIHTPSIVKPLLKGEVSGMTEEIKTLSKNGTALPAHCTGERSFSASL
LPWNVKGPRVKIVSVSLAVLAVITAVTMAIFR
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgccggctgcttgtgattcgttagtggaagacatcgaagatattgtttcagcagaagat
ccaacacctcatgatcaactgtttgcaaaaaggagcattgttccacatgttagaaagaga
aacaagcacaaacaggatgatgggacagaagatttgcatgctgatagtgttatccctgga
acacagaagatctgggtgaagacctggggttgttcacataacaattcagatggcgaatac
atggcaggccagctggccgtttatgggtataaaattacagacaattcactcgatgcagat
ttgtggctgctaaatagttgtactgtcaaaaatccagctgaagatcactttagaaactcg
ataaagaaagctcaagagcaaaataaaaaggtcgtagttgctggatgtgttcctcaagcc
caaccacggatggactatattaaagggttgagcattattggggttcagcaaatagatcgt
gttgttgaagtcgttgaagaaacaattaaaggtcactctgtgagactactgggtcagaag
aaggataagggaaaacgtttgggaggagctcgactagatttgccaaagattaggaaaaac
ccactgatagaaatcatttccatcaacactggctgcctgaatgcttgcacatactgcaaa
accaagcacgcaagaggagacctggctagttactcagtcgcagagctagtagaccgagcc
atccagtcttttcaagaaggtgtctgtgaaatatggctgactagcgaagatacaggggct
tatggaagggacatcgggacagaccttccaacattgctttggaaactggtggaagtaatt
cctgaaggagcaatgctgaggcttgggatgaccaaccctccatatattttggaacatctg
gaggaaatggcaaaaatcctccttcacccaagggtctattccttccttcatgtgccagtt
cagactggatcagacagcgttcttatggacatgaaaagagagtactgcatagcagacttt
aaacgggtagcagacttcttgaaggaacaggtgccagggattacagttgccacagacatt
atctgtggctttcccggtgagacagaagtggacttccaagaaactctaaaactaattcag
gagtacaagtttccgagcctgttcatcaatcagttttacccacgtccaggaactccagct
gccaaaatggaacaggttccagcccaagtgaaaaagcagagaacaaggatgctgtcccag
ctgtttcagtcctataccccatatgattataagattggtgagaagcagcaggttctgata
acagaagaatcatttgatggccagtactatgtcgctcacaacaaattttatgagcaagtt
ctggtgcccaagcaaccggaacttctgggaaaaatgatcgaggtagatatttatgaagca
gggaaacattttatgaagggaaagccagcacaaaatggaaagatccacactccttcaatc
gtcaaaccattactaaagggtgaagtatcagggatgacagaggaaatcaagaccctgagt
aagaatggcacagcccttcctgcacattgcactggtgagaggtccttcagtgcaagcctg
ttgccttggaacgtgaaaggcccaagagtaaagatagtgtctgtaagcctggctgtgttg
gcagtgataacggctgtaactatggcgatattcagatag
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